Description: The Biology Project handles all biology related activities in Gentoo.

Email: sci-biology@gentoo.org

URL: https://wiki.gentoo.org/wiki/Project:Biology

Members

• Francisco (Pacho) Ramos (<pacho@gentoo.org>)
• David Seifert (<soap@gentoo.org>)

Packages maintained by this project

• acct-group/foldingathome
• acct-user/foldingathome
• dev-libs/igraph
• dev-perl/Bio-DB-HTS
• dev-perl/librg-utils-perl
• dev-python/intervaltree
• sci-biology/STAR
• sci-biology/aaindex
• sci-biology/abyss
• sci-biology/amap
• sci-biology/augustus
• sci-biology/bamtools
• sci-biology/bcftools
• sci-biology/bedtools
• sci-biology/bfast
• sci-biology/biogrep
• sci-biology/bioperl
• sci-biology/bioperl-db
• sci-biology/bioperl-network
• sci-biology/bioperl-run
• sci-biology/biopython
• sci-biology/biosql
• sci-biology/blat
• sci-biology/bowtie
• sci-biology/bwa
• sci-biology/cd-hit
• sci-biology/clustal-omega
• sci-biology/clustalw
• sci-biology/clustalw-mpi
• sci-biology/cutg
• sci-biology/dialign-tx
• sci-biology/dialign2
• sci-biology/elph
• sci-biology/embassy
• sci-biology/embassy-cbstools
• sci-biology/embassy-clustalomega
• sci-biology/embassy-domainatrix
• sci-biology/embassy-domalign
• sci-biology/embassy-domsearch
• sci-biology/embassy-emnu
• sci-biology/embassy-esim4
• sci-biology/embassy-hmmer
• sci-biology/embassy-iprscan
• sci-biology/embassy-mse
• sci-biology/embassy-phylipnew
• sci-biology/embassy-signature
• sci-biology/embassy-structure
• sci-biology/embassy-topo
• sci-biology/embassy-vienna
• sci-biology/emboss
• sci-biology/eugene
• sci-biology/exonerate
• sci-biology/fasta
• sci-biology/fasttree
• sci-biology/finchtv
• sci-biology/foldingathome
• sci-biology/glimmer
• sci-biology/glimmerhmm
• sci-biology/gmap
• sci-biology/hmmer
• sci-biology/iedera
• sci-biology/infernal
• sci-biology/iqpnni
• sci-biology/kalign
• sci-biology/kallisto
• sci-biology/lagan
• sci-biology/libgtextutils
• sci-biology/mafft
• sci-biology/maq
• sci-biology/maqview
• sci-biology/mcl
• sci-biology/mosaik
• sci-biology/mothur
• sci-biology/mrbayes
• sci-biology/mummer
• sci-biology/muscle
• sci-biology/newick-utils
• sci-biology/pals
• sci-biology/paml
• sci-biology/phylip
• sci-biology/phyml
• sci-biology/piler
• sci-biology/pilercr
• sci-biology/plink
• sci-biology/poa
• sci-biology/prank
• sci-biology/primer3
• sci-biology/prints
• sci-biology/probcons
• sci-biology/prodigal
• sci-biology/profphd
• sci-biology/prosite
• sci-biology/pysam
• sci-biology/qrna
• sci-biology/raxml
• sci-biology/rebase
• sci-biology/recon
• sci-biology/samtools
• sci-biology/seaview
• sci-biology/seqan
• sci-biology/sibsim4
• sci-biology/sim4
• sci-biology/stride
• sci-biology/t-coffee
• sci-biology/tree-puzzle
• sci-biology/treeviewx
• sci-biology/trf
• sci-biology/trnascan-se
• sci-biology/uchime
• sci-biology/ucsc-genome-browser
• sci-biology/unafold
• sci-biology/update-blastdb
• sci-biology/vcftools
• sci-biology/velvet
• sci-biology/wise
• sci-biology/yass
• sci-libs/dcmtk
• sci-libs/htslib
• sci-libs/libmuscle
• sci-libs/profnet
• sci-libs/profphd-utils
• sci-visualization/circos
• dev-lang/yaggo
• dev-perl/Algorithm-Loops
• dev-perl/BTLib
• dev-perl/Bio-BigFile
• dev-perl/Bio-DB-Das-Chado
• dev-perl/Config-Std
• dev-perl/DBIx-DBStag
• dev-perl/Log-Cabin
• dev-perl/Scalar-Util-Numeric
• dev-perl/Set-IntSpan-Fast
• dev-perl/Text-Graph
• dev-perl/Text-ParseWords
• dev-perl/Text-RecordParser
• dev-perl/Time-Progress
• dev-perl/go-db-perl
• dev-python/gffpandas
• dev-python/py2bit
• dev-python/pyBigWig
• dev-python/pybedtools
• dev-util/makefile2graph
• sci-biology/ANGLE-bin
• sci-biology/AlignGraph
• sci-biology/BBmap
• sci-biology/BRAKER
• sci-biology/BRANCH
• sci-biology/CAT
• sci-biology/FLASH
• sci-biology/Fastaq
• sci-biology/GAL
• sci-biology/IMAGE
• sci-biology/KING
• sci-biology/KaKs_Calculator
• sci-biology/LINKS
• sci-biology/MaSuRCA
• sci-biology/MeV
• sci-biology/MochiView
• sci-biology/MuSeqBox
• sci-biology/NGSEPcore
• sci-biology/NGSEPcore-bin
• sci-biology/ONTO-PERL
• sci-biology/ParaAT
• sci-biology/RAILS
• sci-biology/Rcorrector
• sci-biology/SEECER
• sci-biology/SPAdes
• sci-biology/SSAKE
• sci-biology/SnpEff
• sci-biology/SolexaQA
• sci-biology/TransDecoder
• sci-biology/VelvetOptimiser
• sci-biology/YASRA
• sci-biology/abacas
• sci-biology/act-bin
• sci-biology/aghermann
• sci-biology/align_to_scf
• sci-biology/angsd
• sci-biology/assembly-stats
• sci-biology/bam-readcount
• sci-biology/bambus
• sci-biology/bamql
• sci-biology/barrnap
• sci-biology/beagle
• sci-biology/bedops
• sci-biology/biobambam2
• sci-biology/bismark
• sci-biology/brat
• sci-biology/brat_bw
• sci-biology/brat_nova
• sci-biology/btl_bloomfilter
• sci-biology/cast-bin
• sci-biology/cdbfasta
• sci-biology/cluster
• sci-biology/cnrun
• sci-biology/codonw
• sci-biology/conform-gt
• sci-biology/coral
• sci-biology/cross_genome
• sci-biology/deeptools
• sci-biology/deeptools-intervals
• sci-biology/diamond
• sci-biology/edena
• sci-biology/epga
• sci-biology/erpin
• sci-biology/exonerate-gff3
• sci-biology/fastdnaml
• sci-biology/fastqc
• sci-biology/ffindex
• sci-biology/flexbar
• sci-biology/freebayes
• sci-biology/fsa
• sci-biology/fsl
• sci-biology/genepop
• sci-biology/genomeview-bin
• sci-biology/germline
• sci-biology/gffcompare
• sci-biology/gffread
• sci-biology/glean
• sci-biology/grabix
• sci-biology/graf-bin
• sci-biology/grappa
• sci-biology/hexamer
• sci-biology/hisat2
• sci-biology/idba
• sci-biology/imagej
• sci-biology/jannovar-bin
• sci-biology/jellyfish
• sci-biology/jtreeview-bin
• sci-biology/karect
• sci-biology/lastz
• sci-biology/libBigWig
• sci-biology/lighter
• sci-biology/lucy
• sci-biology/lumpy-sv
• sci-biology/mappy
• sci-biology/megahit
• sci-biology/merlin
• sci-biology/minimap2
• sci-biology/mip-scaffolder
• sci-biology/miranda
• sci-biology/mreps
• sci-biology/mrfast
• sci-biology/msautil
• sci-biology/nanopolish
• sci-biology/nextclip
• sci-biology/nrcl
• sci-biology/ntCard
• sci-biology/nxtrim
• sci-biology/pairagon
• sci-biology/parafly
• sci-biology/pbbam
• sci-biology/pbcopper
• sci-biology/perga
• sci-biology/perlprimer
• sci-biology/pileup
• sci-biology/portrait
• sci-biology/prinseq-lite
• sci-biology/proda
• sci-biology/psx
• sci-biology/quicktree
• sci-biology/rnaplex
• sci-biology/sabre
• sci-biology/samstat
• sci-biology/scan_for_matches
• sci-biology/scythe
• sci-biology/seqtk
• sci-biology/seqtools
• sci-biology/sff_dump
• sci-biology/sickle
• sci-biology/skewer-bin
• sci-biology/smalt
• sci-biology/smalt-bin
• sci-biology/snap
• sci-biology/snpomatic
• sci-biology/sra-tools
• sci-biology/ssaha2-bin
• sci-biology/stacks
• sci-biology/stringtie
• sci-biology/subread
• sci-biology/swissknife
• sci-biology/tabixpp
• sci-biology/tagdust
• sci-biology/tigr-foundation-libs
• sci-biology/trf-bin
• sci-biology/trimmomatic
• sci-biology/trinityrnaseq
• sci-biology/twinscan
• sci-biology/vague-bin
• sci-biology/vcflib
• sci-biology/verifyBamID
• sci-biology/vt
• sci-biology/wgs_tools
• sci-biology/yaha
• sci-biology/zmap
• sci-biology/zmsort
• sci-libs/htslib-plugins
• sci-libs/iRODS
• sci-libs/itk
• sci-libs/lib2bit
• sci-libs/libStatGen
• sci-libs/libmaus2

---