Gentoo Packages

# Copyright 1999-2023 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2

EAPI=7

PYTHON_COMPAT=( python3_{9..11} )

inherit cmake python-single-r1 git-r3

# Package information
MY_PN="InsightToolkit"
MY_P="${MY_PN}-${PV}"

# ITK Remotes
ITKAdaptiveDenoising_HASH="674218fae611184d4168bd0c7b027f1a0d1a8a18"
ITKMGHImageIO_HASH="74379a6350f8017be2b4481c807726d56fec14bb"
ITKIOScanco_HASH="348ca2eb519cf11c976884fb792ec1b0a08a277a"
ITKMorphologicalContourInterpolator_HASH="44854a462309ca902d2d21a18dca50f777b9f6a5"

# source code URIs
SRC_URI="
	https://github.com/ntustison/ITKAdaptiveDenoising/archive/${ITKAdaptiveDenoising_HASH}.tar.gz \
		-> ITKAdaptiveDenoising.tar.gz
	https://github.com/InsightSoftwareConsortium/itkMGHImageIO/archive/${ITKMGHImageIO_HASH}.tar.gz \
		-> ITKMGHImageIO.tar.gz
	https://github.com/KitwareMedical/ITKIOScanco/archive/${ITKIOScanco_HASH}.tar.gz \
		-> ITKIOScanco.tar.gz
	https://github.com/KitwareMedical/ITKMorphologicalContourInterpolation/archive/${ITKMorphologicalContourInterpolator_HASH}.tar.gz \
		-> ITKMorphologicalContourInterpolator.tar.gz
"

DESCRIPTION="NLM Insight Segmentation and Registration Toolkit"
HOMEPAGE="http://www.itk.org"

EGIT_REPO_URI="https://github.com/InsightSoftwareConsortium/ITK.git"
EGIT_TAG="v5.3rc03"
LICENSE="Apache-2.0"
if [[ ${PV} != *9999* ]]; then
	KEYWORDS="~amd64 ~x86"
fi

SLOT="0"

IUSE="debug deprecated doc examples fftw python review test vtkglue DICOM"

RESTRICT="!test? ( test )"

DEPEND="
	dev-libs/double-conversion:0=
	media-libs/openjpeg:2
	media-libs/libpng:0=
	media-libs/tiff:0=
	sci-libs/dcmtk:0=
	sci-libs/hdf5:0=[cxx]
	sys-libs/zlib:0=
	media-libs/libjpeg-turbo:0=
	fftw? ( sci-libs/fftw:3.0= )
	vtkglue? ( sci-libs/vtk:=[rendering,python?] )
	sci-medical/gdcm
	dev-cpp/eigen
"
RDEPEND="${DEPEND}
	sys-apps/coreutils
	python? (
		>=dev-lang/swig-2.0:0
		dev-libs/castxml
		${PYTHON_DEPS}
		)
	doc? ( app-doc/doxygen )
"
BDEPEND=""

REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"

S="${WORKDIR}/itk-${PV}"

PATCHES=()

src_unpack() {
	#Unpack ITKAdaptiveDenoising
	 tar xzf ${DISTDIR}/ITKAdaptiveDenoising.tar.gz || die
	 tar xzf ${DISTDIR}/ITKMGHImageIO.tar.gz || die
	 tar xzf ${DISTDIR}/ITKIOScanco.tar.gz || die
	 tar xzf ${DISTDIR}/ITKMorphologicalContourInterpolator.tar.gz || die

	#NOTE: This ebuild has the particularity that it uses both git and source
	#files. Therefore we need to call the src_unpack function from the git module
	git-r3_src_unpack
}

src_prepare() {

	  sed -i -e "s/find_package(OpenJPEG 2.0.0/find_package(OpenJPEG/g"\
		Modules/ThirdParty/GDCM/src/gdcm/CMakeLists.txt

	# Symlinking external ITKAdaptiveDenoising
	ln -sr ../ITKAdaptiveDenoising-* Modules/Remote/ITKAdaptiveDenoising || die
	ln -sr ../ITKMGHImageIO-* Modules/Remote/ITKMGHImageIO || die
	ln -sr ../ITKIOScanco-* Modules/Remote/ITKIOScanco || die
	ln -sr ../ITKMorphologicalContourInterpolation-* Modules/Remote/ITKMorphologicalContourInterpolation || die

	cmake_src_prepare
}

src_configure() {
	local mycmakeargs=(
		-DBUILD_SHARED_LIBS:BOOL=ON
		-DBUILD_TESTING="$(usex test ON OFF)"
		-DBUILD_EXAMPLES="$(usex examples ON OFF)"
		-DITK_USE_REVIEW="$(usex review ON OFF)"
		-DITK_BUILD_DOCUMENTATION="$(usex doc ON OFF)"
		-DITK_INSTALL_LIBRARY_DIR=$(get_libdir)

		# ITK Modules
		-DITK_BUILD_DEFAULT_MODULES:BOOL=ON
		-DModule_ITKReview:BOOL=ON
		-DModule_MGHIO:BOOL=ON
		-DModule_ITKIOMINC:BOOL=ON
		-DModule_IOScanco:BOOL=ON
		-DModule_MorphologicalContourInterpolation:BOOL=ON
		-DModule_SimpleITKFilters:BOOL=
		-DModule_GenericLabelInterpolator:BOOL=ON
		-DModule_AdaptiveDenoising:BOOL=ON
		-DModule_ITKVtkGlue:BOOL=$(usex vtkglue ON OFF)
		-DModule_ITKDeprecated:BOOL=$(usex deprecated ON OFF)
		-DKWSYS_USE_MD5:BOOL=ON # Required by SlicerExecutionModel
		-DITK_WRAPPING:BOOL=OFF #${BUILD_SHARED_LIBS} ## HACK:  QUICK CHANGE
		-DITK_WRAP_PYTHON:BOOL=${Slicer_BUILD_ITKPython}
		-DExternalData_OBJECT_STORES:PATH=${ExternalData_OBJECT_STORES}
		-DITK_USE_SYSTEM_EIGEN:BOOL=ON

		# DCMTK
		-DITK_USE_SYSTEM_DCMTK:BOOL=ON
		-DModule_ITKIODCMTK:BOOL=$(usex DICOM ON OFF)

		# ZLIB
		-DITK_USE_SYSTEM_ZLIB:BOOL=ON

		-DGDCM_USE_SYSTEM_OPENJPEG=ON
		-DITK_FORBID_DOWNLOADS:BOOL=ON
		-DITK_USE_SYSTEM_DCMTK=ON
		-DITK_USE_SYSTEM_DOUBLECONVERSION=ON
		-DITK_USE_SYSTEM_HDF5=ON
		-DITK_USE_SYSTEM_JPEG=ON
		-DITK_USE_SYSTEM_PNG=ON
		-DITK_USE_SYSTEM_TIFF=ON
		-DITK_USE_SYSTEM_ZLIB=ON
		-DITK_USE_KWSTYLE=OFF
		-DITK_BUILD_DEFAULT_MODULES=ON
		-DITK_COMPUTER_MEMORY_SIZE="${ITK_COMPUTER_MEMORY_SIZE:-1}"
		-Ddouble-conversion_INCLUDE_DIRS="${EPREFIX}/usr/include/double-conversion"
	  )

	if use fftw; then
		mycmakeargs+=(
			-DUSE_FFTWD=ON
			-DUSE_FFTWF=ON
			-DUSE_SYSTEM_FFTW=ON
			-DITK_WRAP_double=ON
			-DITK_WRAP_vector_double=ON
			-DITK_WRAP_covariant_vector_double=ON
			-DITK_WRAP_complex_double=ON
		)
	fi

	if use python; then
		mycmakeargs+=(
		  -DITK_WRAP_PYTHON=ON
		  -DITK_WRAP_DIMS="${ITK_WRAP_DIMS:-2;3}"
		)
	else
		mycmakeargs+=(
		  -DITK_WRAP_PYTHON=OFF
		)
	fi
	cmake_src_configure
}

src_install() {
	cmake_src_install

	if use examples; then
		docinto examples
		docompress -x /usr/share/doc/${PF}/examples
		dodoc -r "${S}"/Examples/*
	fi

	echo "ITK_DATA_ROOT=${EPREFIX}/usr/share/${PN}/data" > ${T}/40${PN}
	local ldpath="${EPREFIX}/usr/$(get_libdir)/InsightToolkit"

	if use python; then
		echo "PYTHONPATH=${EPREFIX}/usr/$(get_libdir)/InsightToolkit/WrapITK/Python" >> "${T}"/40${PN}
		ldpath="${ldpath}:${EPREFIX}/usr/$(get_libdir)/InsightToolkit/WrapITK/lib"
	fi

	echo "LDPATH=${ldpath}" >> "${T}"/40${PN}
	doenvd "${T}"/40${PN}

	if use doc; then
		cd "${WORKDIR}"/html || die
		rm  *.md5 || die "Failed to remove superfluous hashes"
		einfo "Installing API docs. This may take some time."
		docinto api-docs
		dodoc -r *
	fi
}

pkg_postinst(){
	libraries=$(find /usr/lib64 -name "libitk*.so" -or -name "libITK*.so")

	for i in ${libraries}
	do
		b=$(basename $i)
		ln -sf $i /usr/lib64/${b%-*}.so || die
	done
}