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Package Information

Description:

Perl bindings for sci-libs/htslib

License:

Apache-2.0

Versions

Metadata

Maintainers

• Gentoo Biology Project (sci-biology@gentoo.org) - Type: project
• Gentoo Perl Project (perl@gentoo.org) - Type: project

Upstream

• Remote IDs:
  • github: Ensembl/Bio-DB-HTS
  • cpan: Bio-DB-HTS
  • cpan-module: Bio::DB::HTS
  • cpan-module: Bio::DB::HTS::AlignWrapper
  • cpan-module: Bio::DB::HTS::Alignment
  • cpan-module: Bio::DB::HTS::Constants
  • cpan-module: Bio::DB::HTS::Fai
  • cpan-module: Bio::DB::HTS::Faidx
  • cpan-module: Bio::DB::HTS::FetchIterator
  • cpan-module: Bio::DB::HTS::Kseq
  • cpan-module: Bio::DB::HTS::Kseq::Record
  • cpan-module: Bio::DB::HTS::Pileup
  • cpan-module: Bio::DB::HTS::PileupWrapper
  • cpan-module: Bio::DB::HTS::Query
  • cpan-module: Bio::DB::HTS::ReadIterator
  • cpan-module: Bio::DB::HTS::Segment
  • cpan-module: Bio::DB::HTS::Segment::Iterator
  • cpan-module: Bio::DB::HTS::SplitAlignmentPart
  • cpan-module: Bio::DB::HTS::Tabix
  • cpan-module: Bio::DB::HTS::Tabix::Iterator
  • cpan-module: Bio::DB::HTS::Target
  • cpan-module: Bio::DB::HTS::VCF
  • cpan-module: Bio::DB::HTS::VCF::Header
  • cpan-module: Bio::DB::HTS::VCF::HeaderPtr
  • cpan-module: Bio::DB::HTS::VCF::Iterator
  • cpan-module: Bio::DB::HTS::VCF::Row
  • cpan-module: Bio::DB::HTS::VCF::RowPtr
  • cpan-module: Bio::DB::HTS::VCF::Sweep
  • cpan-module: Bio::DB::HTSfile
  • cpan-module: Bio::SeqFeature::HTSCoverage

<pkgmetadata>
	<maintainer type="project">
		<email>sci-biology@gentoo.org</email>
		<name>Gentoo Biology Project</name>
	</maintainer>
	<maintainer type="project">
		<email>perl@gentoo.org</email>
		<name>Gentoo Perl Project</name>
	</maintainer>
	<upstream>
		<remote-id type="github">Ensembl/Bio-DB-HTS</remote-id>
		<remote-id type="cpan">Bio-DB-HTS</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::AlignWrapper</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::Alignment</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::Constants</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::Fai</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::Faidx</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::FetchIterator</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::Kseq</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::Kseq::Record</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::Pileup</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::PileupWrapper</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::Query</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::ReadIterator</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::Segment</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::Segment::Iterator</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::SplitAlignmentPart</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::Tabix</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::Tabix::Iterator</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::Target</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::VCF</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::VCF::Header</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::VCF::HeaderPtr</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::VCF::Iterator</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::VCF::Row</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::VCF::RowPtr</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTS::VCF::Sweep</remote-id>
		<remote-id type="cpan-module">Bio::DB::HTSfile</remote-id>
		<remote-id type="cpan-module">Bio::SeqFeature::HTSCoverage</remote-id>
	</upstream>
</pkgmetadata>

Lint Warnings

• [Warning] Missing md5-cache for version 3.10.0-r2. Run 'ebuild <ebuild_file> manifest' or 'egencache' to generate it.

Files

• 2.11-build_env_ldflags.patch
• 2.11-build_split_htslib_opts.patch

Manifest