Gentoo Packages

sci-biology/abyss (gentoo)

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Install

Install this package:

emerge -a sci-biology/abyss

If the package is masked, you can unmask it using the autounmask tool or standard emerge options:

autounmask sci-biology/abyss

Or alternatively:

emerge --autounmask-write -a sci-biology/abyss

Package Information

Description:
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
Homepage:
https://www.bcgsc.ca/resources/software/abyss/
License:
GPL-3

Versions

Version EAPI Keywords Slot
2.3.4 8 ~amd64 ~x86 0

Metadata

Maintainers

Upstream

Raw Metadata XML 
<pkgmetadata>
	<maintainer type="project">
		<email>sci-biology@gentoo.org</email>
		<name>Gentoo Biology Project</name>
	</maintainer>
	<use>
		<flag name="misc-haskell">build abyss-samtobreak tool, pull in haskell toolchain</flag>
	</use>
	<upstream>
		<remote-id type="github">bcgsc/abyss</remote-id>
	</upstream>
</pkgmetadata>

Lint Warnings

USE Flags

Manage flags for this package: euse -i <flag> -p sci-biology/abyss | euse -E <flag> -p sci-biology/abyss | euse -D <flag> -p sci-biology/abyss

Flag Description 2.3.4
misc-haskell build abyss-samtobreak tool, pull in haskell toolchain ✓
openmp Build support for the OpenMP (support parallel computing), requires >=sys-devel/gcc-4.2 built with USE="openmp" ✓

Manifest

Type File Size Versions
DIST abyss-2.3.4.tar.gz 3511137 bytes 2.3.4
Unmatched Entries
Type File Size