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Install

Install this package:

emerge -a sci-biology/hmmer

Package Information

Description:

Sequence analysis using profile hidden Markov models

Homepage:

http://hmmer.org/

License:

GPL-3

Versions

Metadata

Maintainers

• Gentoo Biology Project (sci-biology@gentoo.org) - Type: project

<pkgmetadata>
	<maintainer type="project">
		<email>sci-biology@gentoo.org</email>
		<name>Gentoo Biology Project</name>
	</maintainer>
</pkgmetadata>

Lint Warnings

• [Warning] Ebuild 2.3.2 has a line exceeding 80 positions on line 53.
• [Warning] Ebuild 2.3.2 calls 'dolib.a' unconditionally. Static libraries should typically be explicitly required, usually behind a USE flag like 'static-libs' (PG0302).
• [Warning] USE flag 'cpu_flags_ppc_altivec' in ebuild 3.1_beta2 is not documented in metadata.xml
• [Warning] USE flag 'cpu_flags_x86_sse' in ebuild 3.1_beta2 is not documented in metadata.xml
• [Warning] USE flag 'gsl' in ebuild 3.1_beta2 is not documented in metadata.xml
• [Warning] USE flag 'mpi' in ebuild 3.1_beta2 is not documented in metadata.xml
• [Warning] USE flag 'test' in ebuild 3.1_beta2 is not documented in metadata.xml
• [Warning] USE flag 'cpu_flags_ppc_altivec' in ebuild 2.3.2 is not documented in metadata.xml
• [Warning] USE flag 'test' in ebuild 2.3.2 is not documented in metadata.xml
• [Error] Manifest entry for unused DIST file 'hmmer-2.3.2.tar.gz'
• [Error] Manifest entry for unused DIST file 'hmmer-3.1b2.tar.gz'
• [Error] Repository is missing a repo-name in metadata/layout.conf or profiles/repo_name
• [Notice] Package has only unstable keywords for arch(es): [ amd64, x86 ], all versions are unstable: [ 2.3.2, 3.1_beta2 ]
• [Warning] Ebuild 3.1_beta2 uses a regular USE flag 'cpu_flags_ppc_altivec' containing an underscore. Underscores are reserved for USE_EXPAND flags.
• [Warning] Ebuild 3.1_beta2 uses a regular USE flag 'cpu_flags_x86_sse' containing an underscore. Underscores are reserved for USE_EXPAND flags.
• [Warning] Ebuild 2.3.2 uses a regular USE flag 'cpu_flags_ppc_altivec' containing an underscore. Underscores are reserved for USE_EXPAND flags.

USE Flags

Manage flags for this package: euse -i <flag> -p sci-biology/hmmer | euse -E <flag> -p sci-biology/hmmer | euse -D <flag> -p sci-biology/hmmer

Files

• hmmer-2.3.2-fix-build-system-destdir.patch
• hmmer-2.3.2-fix-missing-include-in-configure.patch
• hmmer-2.3.2-fix-perl-shebangs.patch
• hmmer-3.1_beta2-fix-perl-shebangs.patch
• hmmer-3.1_beta2-makefile.patch

Manifest