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Install

Install this package:

emerge -a sci-biology/kallisto

If the package is masked, you can unmask it using the autounmask tool or standard emerge options:

autounmask sci-biology/kallisto

Or alternatively:

emerge --autounmask-write -a sci-biology/kallisto

Package Information

Description:

Near-optimal RNA-Seq quantification

Homepage:

http://pachterlab.github.io/kallisto/

License:

BSD

Versions

Metadata

Maintainers

• Gentoo Biology Project (sci-biology@gentoo.org) - Type: project

Upstream

• Remote IDs:
  • github: pachterlab/kallisto

<pkgmetadata>
	<maintainer type="project">
		<email>sci-biology@gentoo.org</email>
		<name>Gentoo Biology Project</name>
	</maintainer>
	<upstream>
		<remote-id type="github">pachterlab/kallisto</remote-id>
	</upstream>
</pkgmetadata>

Lint Warnings

• [Warning] USE flag 'hdf5' in ebuild 0.46.2-r1 is not documented in metadata.xml
• [Warning] USE flag 'test' in ebuild 0.46.2-r1 is not documented in metadata.xml
• [Error] Missing md5-cache for ebuild kallisto-0.46.2-r1

USE Flags

Manage flags for this package: euse -i <flag> -p sci-biology/kallisto | euse -E <flag> -p sci-biology/kallisto | euse -D <flag> -p sci-biology/kallisto

Files

• kallisto-0.46.2-catch2.patch
• kallisto-0.46.2-cmake.patch
• kallisto-0.46.2-gcc11.patch
• kallisto-0.46.2-htslib.patch

Manifest