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Package Information

Description:

Suite of algorithms for ecological bioinformatics

Homepage:

https://mothur.org/

License:

GPL-3

Versions

Metadata

Maintainers

• Gentoo Biology Project (sci-biology@gentoo.org) - Type: project

Upstream

• Remote IDs:
  • github: mothur/mothur

<pkgmetadata>
	<maintainer type="project">
		<email>sci-biology@gentoo.org</email>
		<name>Gentoo Biology Project</name>
	</maintainer>
	<use>
		<flag name="boost">Depend on <pkg>dev-libs/boost</pkg> for make.contigs to read .gz compressed files.</flag>
		<flag name="gsl">Use <pkg>sci-libs/gsl</pkg> to support diversity estimates for estimiator.single.</flag>
		<flag name="hdf5">Support Biom format 2.0 for the biom.info command via <pkg>sci-libs/hdf5</pkg>.</flag>
	</use>
	<upstream>
		<remote-id type="github">mothur/mothur</remote-id>
	</upstream>
</pkgmetadata>

Lint Warnings

• [Warning] Ebuild 1.48.2 uses IUSE flag 'mpi' which is not documented in metadata.xml. Add the flag to metadata.xml <use> section.
• [Warning] Ebuild 1.48.2 uses IUSE flag 'readline' which is not documented in metadata.xml. Add the flag to metadata.xml <use> section.
• [Warning] Missing md5-cache for version 1.48.2. Run 'ebuild <ebuild_file> manifest' or 'egencache' to generate it.

USE Flags

Files

• mothur-1.48.0-build.patch
• mothur-1.48.2-boost-1.89.patch

Manifest