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Description:

MrBayes is a program for the Bayesian estimation of phylogeny. Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees.

Homepage:

https://nbisweden.github.io/MrBayes/

License:

GPL-2

Versions

Metadata

Description

• MrBayes is a program for the Bayesian estimation of phylogeny. Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees.

Maintainers

• Gentoo Biology Project (sci-biology@gentoo.org) - Type: project

Upstream

• Remote IDs:
  • sourceforge: mrbayes
  • github: NBISweden/MrBayes

<pkgmetadata>
	<maintainer type="project">
		<email>sci-biology@gentoo.org</email>
		<name>Gentoo Biology Project</name>
	</maintainer>
	<longdescription>
MrBayes is a program for the Bayesian estimation of phylogeny.
Bayesian inference of phylogeny is based upon a quantity called the
posterior probability distribution of trees, which is the probability of a
tree conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
	</longdescription>
	<upstream>
		<remote-id type="sourceforge">mrbayes</remote-id>
		<remote-id type="github">NBISweden/MrBayes</remote-id>
	</upstream>
</pkgmetadata>

Lint Warnings

• [Warning] Ebuild 3.2.7 uses IUSE flag 'mpi' which is not documented in metadata.xml. Add the flag to metadata.xml <use> section.
• [Warning] Ebuild 3.2.7 uses IUSE flag 'readline' which is not documented in metadata.xml. Add the flag to metadata.xml <use> section.
• [Warning] Ebuild 3.1.2-r2 uses IUSE flag 'mpi' which is not documented in metadata.xml. Add the flag to metadata.xml <use> section.
• [Warning] Ebuild 3.1.2-r2 uses IUSE flag 'readline' which is not documented in metadata.xml. Add the flag to metadata.xml <use> section.
• [Warning] Missing md5-cache for version 3.2.7. Run 'ebuild <ebuild_file> manifest' or 'egencache' to generate it.
• [Warning] Missing md5-cache for version 3.1.2-r2. Run 'ebuild <ebuild_file> manifest' or 'egencache' to generate it.

USE Flags

Files

• mb_readline_312.patch

Manifest