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# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
inherit toolchain-funcs
DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood"
HOMEPAGE="https://abacus.gene.ucl.ac.uk/software/paml.html"
SRC_URI="https://github.com/abacus-gene/${PN}/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="free-noncomm"
SLOT="0"
KEYWORDS="~amd64 ~x86"
PATCHES=(
"${FILESDIR}"/${PN}-4.10.7-LDFLAGS.patch
)
src_compile() {
emake -C src CC="$(tc-getCC)" CFLAGS="${CFLAGS}" LDFLAGS="${LDFLAGS}"
}
src_install() {
dobin src/{baseml,basemlg,codeml,evolver,pamp,mcmctree,infinitesites,yn00,chi2}
dodoc -r README.md doc/.
insinto /usr/share/${PN}/control
doins examples/*.ctl
insinto /usr/share/${PN}/dat
doins -r examples/stewart* examples/*.dat dat/.
insinto /usr/share/${PN}
doins -r examples
}