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Description:

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures. T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It also allows to estimate the level of consistency of each position within the new alignment with the rest of the alignments.

Homepage:

http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html

License:

GPL-2

Versions

Metadata

Description

• T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures. T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It also allows to estimate the level of consistency of each position within the new alignment with the rest of the alignments.

Maintainers

• Gentoo Biology Project (sci-biology@gentoo.org) - Type: project

Upstream

• Remote IDs:
  • github: cbcrg/tcoffee

<pkgmetadata>
	<maintainer type="project">
		<email>sci-biology@gentoo.org</email>
		<name>Gentoo Biology Project</name>
	</maintainer>
	<longdescription>
		T-Coffee is a multiple sequence alignment package. Given a set of
		sequences (Proteins or DNA), T-Coffee generates a multiple sequence
		alignment. Version 2.00 and higher can mix sequences and structures.
		T-Coffee allows the combination of a collection of multiple/pairwise,
		global or local alignments into a single model. It also allows to
		estimate the level of consistency of each position within the new
		alignment with the rest of the alignments.
	</longdescription>
	<upstream>
		<remote-id type="github">cbcrg/tcoffee</remote-id>
	</upstream>
</pkgmetadata>

Lint Warnings

• [Warning] Missing md5-cache for version 11.00-r3. Run 'ebuild <ebuild_file> manifest' or 'egencache' to generate it.

Files

• t-coffee-11.00-cxx11.patch
• t-coffee-11.00-gcc7.patch
• t-coffee-11.00-makefile.patch
• t-coffee-11.00-mayhem.patch
• t-coffee-11.00-set_proper_dir_permissions.patch

Manifest