Gentoo Packages

Search

Package Information

Description:

tRNAscan-SE detects ~99% of eukaryotic nuclear or prokaryotic tRNA genes, with a false positive rate of less than one per 15 gigabases, and with a search speed of about 30 kb/second. It was implemented for large-scale human genome sequence analysis, but is applicable to other DNAs as well.

Homepage:

http://lowelab.ucsc.edu/tRNAscan-SE/

License:

GPL-2

Versions

Metadata

Description

• tRNAscan-SE detects ~99% of eukaryotic nuclear or prokaryotic tRNA genes, with a false positive rate of less than one per 15 gigabases, and with a search speed of about 30 kb/second. It was implemented for large-scale human genome sequence analysis, but is applicable to other DNAs as well.

Maintainers

• Gentoo Biology Project (sci-biology@gentoo.org) - Type: project

<pkgmetadata>
	<maintainer type="project">
		<email>sci-biology@gentoo.org</email>
		<name>Gentoo Biology Project</name>
	</maintainer>
	<longdescription>
		tRNAscan-SE detects ~99% of eukaryotic nuclear or prokaryotic tRNA
		genes, with a false positive rate of less than one per 15 gigabases,
		and with a search speed of about 30 kb/second. It was implemented for
		large-scale human genome sequence analysis, but is applicable to
		other DNAs as well.
	</longdescription>
</pkgmetadata>

Lint Warnings

• [Warning] Missing md5-cache for version 1.31-r3. Run 'ebuild <ebuild_file> manifest' or 'egencache' to generate it.

Files

• trnascan-se-1.31-clang16.patch
• trnascan-se-1.31-makefile.patch
• trnascan-se-1.31-portable-perl-shebangs.patch

Manifest