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Description:

UCHIME is a new algorithm for detecting chimeric sequences. It was developed in collaboration with Brian Haas, Jose Carlos Clemente, Chris Quince and Rob Knight. Chimeras are commonly created during DNA sample amplification by PCR, especially in community sequencing experiments using single regions such as the 16S rRNA gene in bacteria or the fungal ITS region. UCHIME can detect chimeras using a reference database or de novo using abundance information on the assumption that chimeras are less abundant than their parents because they must have undergone fewer rounds of amplification.

Homepage:

https://www.drive5.com/usearch/manual/uchime_algo.html

License:

public-domain

Versions

Metadata

Description

• UCHIME is a new algorithm for detecting chimeric sequences. It was developed in collaboration with Brian Haas, Jose Carlos Clemente, Chris Quince and Rob Knight. Chimeras are commonly created during DNA sample amplification by PCR, especially in community sequencing experiments using single regions such as the 16S rRNA gene in bacteria or the fungal ITS region. UCHIME can detect chimeras using a reference database or de novo using abundance information on the assumption that chimeras are less abundant than their parents because they must have undergone fewer rounds of amplification.

Maintainers

• Gentoo Biology Project (sci-biology@gentoo.org) - Type: project

<pkgmetadata>
	<maintainer type="project">
		<email>sci-biology@gentoo.org</email>
		<name>Gentoo Biology Project</name>
	</maintainer>
	<longdescription>
	UCHIME is a new algorithm for detecting chimeric sequences. It was developed in
	collaboration with Brian Haas, Jose Carlos Clemente, Chris Quince and Rob
	Knight. Chimeras are commonly created during DNA sample amplification by
	PCR, especially in community sequencing experiments using single regions
	such as the 16S rRNA gene in bacteria or the fungal ITS region. UCHIME can
	detect chimeras using a reference database or de novo using abundance
	information on the assumption that chimeras are less abundant than their
	parents because they must have undergone fewer rounds of amplification.
	</longdescription>
</pkgmetadata>

Lint Warnings

• [Warning] Missing md5-cache for version 4.2.40-r1. Run 'ebuild <ebuild_file> manifest' or 'egencache' to generate it.

Files

• CMakeLists.patch

Manifest