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Description:

Clashlist is a simple UNIX script which uses the awk facility along with the programs Probe and Cluster to build lists of van der Waals clashes from an input PDB-format molecular data file (with H atoms). These lists are organized such that collections of interacting residues are grouped together, sorted by the worst clash. For the purposes of this analysis, a clash is defined as a van der Waals overlap >= 0.4 A.

Homepage:

http://kinemage.biochem.duke.edu/software/index.php

License:

richardson

Versions

Metadata

Description

• Clashlist is a simple UNIX script which uses the awk facility along with the programs Probe and Cluster to build lists of van der Waals clashes from an input PDB-format molecular data file (with H atoms). These lists are organized such that collections of interacting residues are grouped together, sorted by the worst clash. For the purposes of this analysis, a clash is defined as a van der Waals overlap >= 0.4 A.

Maintainers

• Gentoo Chemistry Project (sci-chemistry@gentoo.org) - Type: project

<pkgmetadata>
	<maintainer type="project">
		<email>sci-chemistry@gentoo.org</email>
		<name>Gentoo Chemistry Project</name>
	</maintainer>
	<longdescription>
	Clashlist is a simple UNIX script which uses the awk facility along with
	the programs Probe and Cluster to build lists of van der Waals clashes
	from an input PDB-format molecular data file (with H atoms). These lists
	are organized such that collections of interacting residues are grouped
	together, sorted by the worst clash. For the purposes of this analysis,
	a clash is defined as a van der Waals overlap &gt;= 0.4 A.
	</longdescription>
</pkgmetadata>

Lint Warnings

• [Warning] Missing md5-cache for version 3.17-r1. Run 'ebuild <ebuild_file> manifest' or 'egencache' to generate it.

Manifest