Install this version:
emerge -a =sci-libs/hdf5-2.2.0
If this version is masked, you can unmask it using the autounmask tool or standard emerge options:
autounmask =sci-libs/hdf5-2.2.0
Or alternatively:
emerge --autounmask-write -a =sci-libs/hdf5-2.2.0
| Version | EAPI | Keywords | Slot |
|---|---|---|---|
| 2.2.0 | 8 | ~alpha ~amd64 ~arm ~arm64 ~hppa ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86 ~arm64-macos ~x64-macos | 0/320-cmake |
# Copyright 1999-2026 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
FORTRAN_NEEDED=fortran
inherit cmake fortran-2 flag-o-matic toolchain-funcs
DESCRIPTION="General purpose library and file format for storing scientific data"
HOMEPAGE="https://github.com/HDFGroup/hdf5/"
SRC_URI="https://github.com/HDFGroup/hdf5/releases/download/${PV}/${P}.tar.gz"
LICENSE="NCSA-HDF"
SLOT="0/320-cmake"
KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86 ~arm64-macos ~x64-macos"
IUSE="cxx debug fortran +hl mpi szip test threads unsupported zlib"
RESTRICT="!test? ( test )"
REQUIRED_USE="
!unsupported? (
?? ( cxx mpi )
threads? ( !cxx !mpi !fortran !hl )
)
"
# HDF5 2.x requires libaec's libsz compatibility library, so virtual/szip
# (which also allows sci-libs/szip) is not sufficient here.
DEPEND="
mpi? ( virtual/mpi[romio,fortran?] )
szip? ( sci-libs/libaec:=[szip] )
zlib? ( virtual/zlib:= )
"
RDEPEND="
${DEPEND}
"
BDEPEND="
dev-lang/perl
"
pkg_setup() {
use fortran && fortran-2_pkg_setup
if use mpi; then
if has_version 'sci-libs/hdf5[-mpi]'; then
ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
fi
export CC=mpicc
use fortran && export FC=mpif90
elif has_version 'sci-libs/hdf5[mpi]'; then
ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
fi
}
src_configure() {
# bug #686620
use sparc && tc-is-gcc && append-flags -fno-tree-ccp
local mycmakeargs=(
# lib/cmake dirs follow CMAKE_INSTALL_LIBDIR from the eclass
-DHDF5_USE_GNU_DIRS=ON
# just LICENSE
-DHDF5_INSTALL_DATA_DIR=tmp
# redundant to include?
-DHDF5_INSTALL_MODULE_DIR=tmp
-DHDF5_INSTALL_DOC_DIR=share/doc/${PF}
-DH5_DEFAULT_PLUGINDIR="${EPREFIX}/usr/$(get_libdir)/${PN}/plugin"
-DHDF5_ALLOW_UNSUPPORTED=$(usex unsupported)
-DHDF5_ONLY_SHARED_LIBS=ON
-DHDF5_ENABLE_TRACE=$(usex debug)
-DHDF5_ENABLE_HDFS=OFF
# the direct VFD needs O_DIRECT, which is Linux-only here;
# requesting it elsewhere is a hard configure error
-DHDF5_ENABLE_DIRECT_VFD=$(usex kernel_linux)
-DHDF5_ENABLE_PARALLEL=$(usex mpi)
-DHDF5_ENABLE_SUBFILING_VFD=OFF
-DHDF5_ENABLE_SZIP_SUPPORT=$(usex szip)
-DHDF5_ENABLE_ZLIB_SUPPORT=$(usex zlib)
-DHDF5_USE_ZLIB_NG=OFF
-DHDF5_ENABLE_THREADSAFE=$(usex threads)
-DHDF5_ENABLE_CONCURRENCY=OFF
-DHDF5_ENABLE_MAP_API=OFF
-DHDF5_BUILD_DOC=OFF
-DBUILD_TESTING=$(usex test)
-DHDF5_BUILD_PARALLEL_TOOLS=OFF
-DHDF5_BUILD_TOOLS=ON
-DHDF5_ENABLE_PLUGIN_SUPPORT=OFF
-DHDF5_BUILD_HL_LIB=$(usex hl)
-DHDF5_BUILD_FORTRAN=$(usex fortran)
-DHDF5_BUILD_CPP_LIB=$(usex cxx)
-DHDF5_BUILD_JAVA=OFF
-DHDF5_BUILD_EXAMPLES=OFF
)
# do not force the compiler used for build
if use mpi; then
mycmakeargs+=( -DHDF5_H5CC_C_COMPILER=mpicc )
use cxx && mycmakeargs+=( -DHDF5_H5CC_CXX_COMPILER=mpic++ )
use fortran && mycmakeargs+=( -DHDF5_H5CC_Fortran_COMPILER=mpif90 )
else
mycmakeargs+=( -DHDF5_H5CC_C_COMPILER='${CC:-cc}' )
use cxx && mycmakeargs+=( -DHDF5_H5CC_CXX_COMPILER='${CXX:-c++}' )
use fortran &&
mycmakeargs+=( -DHDF5_H5CC_Fortran_COMPILER='${FC:-gfortran}' )
fi
cmake_src_configure
}
src_install() {
cmake_src_install
rm -r "${ED}/usr/tmp" || die
}
Manage flags for this package:
euse -i <flag> -p sci-libs/hdf5 |
euse -E <flag> -p sci-libs/hdf5 |
euse -D <flag> -p sci-libs/hdf5
mpi? ( virtual/mpi[romio,fortran?] ) szip? ( sci-libs/libaec:=[szip] ) zlib? ( virtual/zlib:= )
mpi? ( virtual/mpi[romio,fortran?] ) szip? ( sci-libs/libaec:=[szip] ) zlib? ( virtual/zlib:= )
dev-lang/perl
| Type | File | Size | Source URLs |
|---|---|---|---|
| DIST | hdf5-2.2.0.tar.gz | 42131403 bytes | https://github.com/HDFGroup/hdf5/releases/download/2.2.0/hdf5-2.2.0.tar.gz |