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Description:

Provides clonesim, a clone simulator that simulates shotgun genomic clones, and flowsim, that takes the output from clonesim (or any other Fasta-formatted file) and generates simulated reads from them mimicing Roche's 454 pyrosequencing technology, writing output in 454's native SFF format. The flowgram generation is based on empirical distributions derived from real data (although analytic distributions are available too, if you prefer). The Darcs repository is at <http://malde.org/~ketil/biohaskell/flowsim>.

Homepage:

http://biohaskell.org/Applications/FlowSim

License:

GPL-2

Versions

Metadata

Description

• Provides clonesim, a clone simulator that simulates shotgun genomic clones, and flowsim, that takes the output from clonesim (or any other Fasta-formatted file) and generates simulated reads from them mimicing Roche's 454 pyrosequencing technology, writing output in 454's native SFF format. The flowgram generation is based on empirical distributions derived from real data (although analytic distributions are available too, if you prefer). The Darcs repository is at <http://malde.org/~ketil/biohaskell/flowsim>.

Maintainers

• Gentoo Haskell (haskell@gentoo.org) - Type: project

<pkgmetadata>
	<maintainer type="project">
		<email>haskell@gentoo.org</email>
		<name>Gentoo Haskell</name>
	</maintainer>
	<longdescription>
		Provides clonesim, a clone simulator that simulates shotgun
		genomic clones, and flowsim, that takes the output from clonesim
		(or any other Fasta-formatted file) and generates simulated
		reads from them mimicing Roche's 454 pyrosequencing technology,
		writing output in 454's native SFF format.  The flowgram
		generation is based on empirical distributions derived from real
		data (although analytic distributions are available too, if you
		prefer).
		
		The Darcs repository is at &lt;http://malde.org/~ketil/biohaskell/flowsim&gt;.
	</longdescription>
</pkgmetadata>

Lint Warnings

• [Warning] Missing md5-cache for version 0.3.5. Run 'ebuild <ebuild_file> manifest' or 'egencache' to generate it.

Manifest