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dev-python/RNAlysis - 4.1.2 (pypi)

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Package Information

Description:
RNAlysis is an analysis software for RNA sequencing data. RNAlysis can help to filter, visualize, explore, analyze, and share your data.
Homepage:
https://github.com/GuyTeichman/RNAlysis
License:
MIT

Ebuild Details

Version EAPI Keywords Slot
4.1.2 8 ~amd64 ~x86 0
View Raw Ebuild 
# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="RNAlysis is an analysis software for RNA sequencing data. RNAlysis can help to filter, visualize, explore, analyze, and share your data."

HOMEPAGE="https://github.com/GuyTeichman/RNAlysis"
LICENSE="MIT"
SRC_URI="https://files.pythonhosted.org/packages/3d/c9/5b0cc16a6d049e011d13e74150e4924e94d89ad0253f5d03d77361749b55/rnalysis-${REALVERSION}.tar.gz"
SOURCEFILE="rnalysis-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE="all cutadapt fastq hdbscan install-jdk networkx numba picardtools pyvis randomization reports single-set xlmhglite"
DEPENDENCIES="<dev-python/numpy-3.0[${PYTHON_USEDEP}]
	>=dev-python/matplotlib-3.10[${PYTHON_USEDEP}]
	>=dev-python/seaborn-0.13.2[${PYTHON_USEDEP}]
	>=dev-python/statsmodels-0.14.0[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-1.5.0[${PYTHON_USEDEP}]
	dev-python/grid-strategy[${PYTHON_USEDEP}]
	>=dev-python/pyyaml-6.0[${PYTHON_USEDEP}]
	dev-python/UpSetPlot[${PYTHON_USEDEP}]
	>=dev-python/matplotlib-venn-1.1.1[${PYTHON_USEDEP}]
	>=dev-python/scipy-1.14.0[${PYTHON_USEDEP}]
	dev-python/pairwisedist[${PYTHON_USEDEP}]
	>=dev-python/requests-2.32[${PYTHON_USEDEP}]
	>=dev-python/graphviz-0.20.3[${PYTHON_USEDEP}]
	>=dev-python/joblib-1.4.2[${PYTHON_USEDEP}]
	>=dev-python/tqdm-4.67[${PYTHON_USEDEP}]
	>=dev-python/appdirs-1.4.4[${PYTHON_USEDEP}]
	>=dev-python/typing-extensions-4.12[${PYTHON_USEDEP}]
	>=dev-python/pyqt6-6.9[${PYTHON_USEDEP}]
	>=dev-python/qdarkstyle-3.0[${PYTHON_USEDEP}]
	>=dev-python/defusedxml-0.7.1[${PYTHON_USEDEP}]
	>=dev-python/aiohttp-3.11[${PYTHON_USEDEP}]
	>=dev-python/aiodns-3.2[${PYTHON_USEDEP}]
	dev-python/Brotli[${PYTHON_USEDEP}]
	dev-python/aiolimiter[${PYTHON_USEDEP}]
	>=dev-python/tenacity-9.0.0[${PYTHON_USEDEP}]
	dev-python/mslex[${PYTHON_USEDEP}]
	>=dev-python/nest-asyncio-1.6.0[${PYTHON_USEDEP}]
	dev-python/kmedoids[${PYTHON_USEDEP}]
	dev-python/polars[${PYTHON_USEDEP}]
	<dev-python/pandas-3.0[${PYTHON_USEDEP}]
	all? ( dev-python/pyvis[${PYTHON_USEDEP}] )
	all? ( dev-python/numba[${PYTHON_USEDEP}] )
	all? ( >=dev-python/networkx-3.4.2[${PYTHON_USEDEP}] )
	all? ( dev-python/xlmhglite[${PYTHON_USEDEP}] )
	all? ( dev-python/install-jdk[${PYTHON_USEDEP}] )
	all? ( dev-python/hdbscan[${PYTHON_USEDEP}] )
	all? ( dev-python/cutadapt[${PYTHON_USEDEP}] )
	cutadapt? ( dev-python/cutadapt[${PYTHON_USEDEP}] )
	fastq? ( dev-python/cutadapt[${PYTHON_USEDEP}] )
	hdbscan? ( dev-python/hdbscan[${PYTHON_USEDEP}] )
	install-jdk? ( dev-python/install-jdk[${PYTHON_USEDEP}] )
	networkx? ( >=dev-python/networkx-3.4.2[${PYTHON_USEDEP}] )
	numba? ( dev-python/numba[${PYTHON_USEDEP}] )
	picardtools? ( dev-python/install-jdk[${PYTHON_USEDEP}] )
	pyvis? ( dev-python/pyvis[${PYTHON_USEDEP}] )
	randomization? ( dev-python/numba[${PYTHON_USEDEP}] )
	reports? ( dev-python/pyvis[${PYTHON_USEDEP}] )
	reports? ( >=dev-python/networkx-3.4.2[${PYTHON_USEDEP}] )
	single-set? ( dev-python/xlmhglite[${PYTHON_USEDEP}] )
	xlmhglite? ( dev-python/xlmhglite[${PYTHON_USEDEP}] )"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"

USE Flags

all
cutadapt
fastq
hdbscan
install-jdk
networkx
numba
picardtools
pyvis
randomization
reports
single-set
xlmhglite

Dependencies

RDEPEND

<dev-python/numpy-3.0[${PYTHON_USEDEP}]
	>=dev-python/matplotlib-3.10[${PYTHON_USEDEP}]
	>=dev-python/seaborn-0.13.2[${PYTHON_USEDEP}]
	>=dev-python/statsmodels-0.14.0[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-1.5.0[${PYTHON_USEDEP}]
	dev-python/grid-strategy[${PYTHON_USEDEP}]
	>=dev-python/pyyaml-6.0[${PYTHON_USEDEP}]
	dev-python/UpSetPlot[${PYTHON_USEDEP}]
	>=dev-python/matplotlib-venn-1.1.1[${PYTHON_USEDEP}]
	>=dev-python/scipy-1.14.0[${PYTHON_USEDEP}]
	dev-python/pairwisedist[${PYTHON_USEDEP}]
	>=dev-python/requests-2.32[${PYTHON_USEDEP}]
	>=dev-python/graphviz-0.20.3[${PYTHON_USEDEP}]
	>=dev-python/joblib-1.4.2[${PYTHON_USEDEP}]
	>=dev-python/tqdm-4.67[${PYTHON_USEDEP}]
	>=dev-python/appdirs-1.4.4[${PYTHON_USEDEP}]
	>=dev-python/typing-extensions-4.12[${PYTHON_USEDEP}]
	>=dev-python/pyqt6-6.9[${PYTHON_USEDEP}]
	>=dev-python/qdarkstyle-3.0[${PYTHON_USEDEP}]
	>=dev-python/defusedxml-0.7.1[${PYTHON_USEDEP}]
	>=dev-python/aiohttp-3.11[${PYTHON_USEDEP}]
	>=dev-python/aiodns-3.2[${PYTHON_USEDEP}]
	dev-python/Brotli[${PYTHON_USEDEP}]
	dev-python/aiolimiter[${PYTHON_USEDEP}]
	>=dev-python/tenacity-9.0.0[${PYTHON_USEDEP}]
	dev-python/mslex[${PYTHON_USEDEP}]
	>=dev-python/nest-asyncio-1.6.0[${PYTHON_USEDEP}]
	dev-python/kmedoids[${PYTHON_USEDEP}]
	dev-python/polars[${PYTHON_USEDEP}]
	<dev-python/pandas-3.0[${PYTHON_USEDEP}]
	all? ( dev-python/pyvis[${PYTHON_USEDEP}] )
	all? ( dev-python/numba[${PYTHON_USEDEP}] )
	all? ( >=dev-python/networkx-3.4.2[${PYTHON_USEDEP}] )
	all? ( dev-python/xlmhglite[${PYTHON_USEDEP}] )
	all? ( dev-python/install-jdk[${PYTHON_USEDEP}] )
	all? ( dev-python/hdbscan[${PYTHON_USEDEP}] )
	all? ( dev-python/cutadapt[${PYTHON_USEDEP}] )
	cutadapt? ( dev-python/cutadapt[${PYTHON_USEDEP}] )
	fastq? ( dev-python/cutadapt[${PYTHON_USEDEP}] )
	hdbscan? ( dev-python/hdbscan[${PYTHON_USEDEP}] )
	install-jdk? ( dev-python/install-jdk[${PYTHON_USEDEP}] )
	networkx? ( >=dev-python/networkx-3.4.2[${PYTHON_USEDEP}] )
	numba? ( dev-python/numba[${PYTHON_USEDEP}] )
	picardtools? ( dev-python/install-jdk[${PYTHON_USEDEP}] )
	pyvis? ( dev-python/pyvis[${PYTHON_USEDEP}] )
	randomization? ( dev-python/numba[${PYTHON_USEDEP}] )
	reports? ( dev-python/pyvis[${PYTHON_USEDEP}] )
	reports? ( >=dev-python/networkx-3.4.2[${PYTHON_USEDEP}] )
	single-set? ( dev-python/xlmhglite[${PYTHON_USEDEP}] )
	xlmhglite? ( dev-python/xlmhglite[${PYTHON_USEDEP}] )

BDEPEND

<dev-python/numpy-3.0[${PYTHON_USEDEP}]
	>=dev-python/matplotlib-3.10[${PYTHON_USEDEP}]
	>=dev-python/seaborn-0.13.2[${PYTHON_USEDEP}]
	>=dev-python/statsmodels-0.14.0[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-1.5.0[${PYTHON_USEDEP}]
	dev-python/grid-strategy[${PYTHON_USEDEP}]
	>=dev-python/pyyaml-6.0[${PYTHON_USEDEP}]
	dev-python/UpSetPlot[${PYTHON_USEDEP}]
	>=dev-python/matplotlib-venn-1.1.1[${PYTHON_USEDEP}]
	>=dev-python/scipy-1.14.0[${PYTHON_USEDEP}]
	dev-python/pairwisedist[${PYTHON_USEDEP}]
	>=dev-python/requests-2.32[${PYTHON_USEDEP}]
	>=dev-python/graphviz-0.20.3[${PYTHON_USEDEP}]
	>=dev-python/joblib-1.4.2[${PYTHON_USEDEP}]
	>=dev-python/tqdm-4.67[${PYTHON_USEDEP}]
	>=dev-python/appdirs-1.4.4[${PYTHON_USEDEP}]
	>=dev-python/typing-extensions-4.12[${PYTHON_USEDEP}]
	>=dev-python/pyqt6-6.9[${PYTHON_USEDEP}]
	>=dev-python/qdarkstyle-3.0[${PYTHON_USEDEP}]
	>=dev-python/defusedxml-0.7.1[${PYTHON_USEDEP}]
	>=dev-python/aiohttp-3.11[${PYTHON_USEDEP}]
	>=dev-python/aiodns-3.2[${PYTHON_USEDEP}]
	dev-python/Brotli[${PYTHON_USEDEP}]
	dev-python/aiolimiter[${PYTHON_USEDEP}]
	>=dev-python/tenacity-9.0.0[${PYTHON_USEDEP}]
	dev-python/mslex[${PYTHON_USEDEP}]
	>=dev-python/nest-asyncio-1.6.0[${PYTHON_USEDEP}]
	dev-python/kmedoids[${PYTHON_USEDEP}]
	dev-python/polars[${PYTHON_USEDEP}]
	<dev-python/pandas-3.0[${PYTHON_USEDEP}]
	all? ( dev-python/pyvis[${PYTHON_USEDEP}] )
	all? ( dev-python/numba[${PYTHON_USEDEP}] )
	all? ( >=dev-python/networkx-3.4.2[${PYTHON_USEDEP}] )
	all? ( dev-python/xlmhglite[${PYTHON_USEDEP}] )
	all? ( dev-python/install-jdk[${PYTHON_USEDEP}] )
	all? ( dev-python/hdbscan[${PYTHON_USEDEP}] )
	all? ( dev-python/cutadapt[${PYTHON_USEDEP}] )
	cutadapt? ( dev-python/cutadapt[${PYTHON_USEDEP}] )
	fastq? ( dev-python/cutadapt[${PYTHON_USEDEP}] )
	hdbscan? ( dev-python/hdbscan[${PYTHON_USEDEP}] )
	install-jdk? ( dev-python/install-jdk[${PYTHON_USEDEP}] )
	networkx? ( >=dev-python/networkx-3.4.2[${PYTHON_USEDEP}] )
	numba? ( dev-python/numba[${PYTHON_USEDEP}] )
	picardtools? ( dev-python/install-jdk[${PYTHON_USEDEP}] )
	pyvis? ( dev-python/pyvis[${PYTHON_USEDEP}] )
	randomization? ( dev-python/numba[${PYTHON_USEDEP}] )
	reports? ( dev-python/pyvis[${PYTHON_USEDEP}] )
	reports? ( >=dev-python/networkx-3.4.2[${PYTHON_USEDEP}] )
	single-set? ( dev-python/xlmhglite[${PYTHON_USEDEP}] )
	xlmhglite? ( dev-python/xlmhglite[${PYTHON_USEDEP}] )

Manifest for 4.1.2

Type File Size Source URLs
DIST rnalysis-4.1.2.tar.gz 66839003 bytes https://files.pythonhosted.org/packages/3d/c9/5b0cc16a6d049e011d13e74150e4924e94d89ad0253f5d03d77361749b55/rnalysis-4.1.2.tar.gz