Gentoo Packages

dev-python/mbf-align - 0.5 (pypi)

Search

Package Information

Description:
Alignment of high througput sequencing data
Homepage:
https://github.com/TyberiusPrime/mbf_align
License:
MIT

Ebuild Details

Version EAPI Keywords Slot
0.5 8 ~amd64 ~x86 0
View Raw Ebuild 
# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="Alignment of high througput sequencing data"

HOMEPAGE="https://github.com/TyberiusPrime/mbf_align"
LICENSE="MIT"
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME//-/_}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME//-/_}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE="doc testing"
DEPENDENCIES="dev-python/pandas[${PYTHON_USEDEP}]
	dev-python/requests[${PYTHON_USEDEP}]
	dev-python/pypipegraph[${PYTHON_USEDEP}]
	dev-python/cython[${PYTHON_USEDEP}]
	dev-python/mbf-externals[${PYTHON_USEDEP}]
	dev-python/mbf-bam[${PYTHON_USEDEP}]
	dev-python/mbf-genomics[${PYTHON_USEDEP}]
	dev-python/dppd-plotnine[${PYTHON_USEDEP}]
	doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
	doc? ( dev-python/sphinx-bootstrap-theme[${PYTHON_USEDEP}] )
	doc? ( dev-python/numpydoc[${PYTHON_USEDEP}] )
	testing? ( dev-python/pytest[${PYTHON_USEDEP}] )
	testing? ( dev-python/pytest-cov[${PYTHON_USEDEP}] )
	testing? ( dev-python/cutadapt[${PYTHON_USEDEP}] )
	testing? ( dev-python/pysam[${PYTHON_USEDEP}] )
	testing? ( dev-python/requests-mock[${PYTHON_USEDEP}] )
	testing? ( dev-python/mbf-externals[${PYTHON_USEDEP}] )
	testing? ( dev-python/mbf-sampledata[${PYTHON_USEDEP}] )
	testing? ( dev-python/mbf-qualitycontrol[${PYTHON_USEDEP}] )"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"

USE Flags

doc
testing

Dependencies

RDEPEND

dev-python/pandas[${PYTHON_USEDEP}]
	dev-python/requests[${PYTHON_USEDEP}]
	dev-python/pypipegraph[${PYTHON_USEDEP}]
	dev-python/cython[${PYTHON_USEDEP}]
	dev-python/mbf-externals[${PYTHON_USEDEP}]
	dev-python/mbf-bam[${PYTHON_USEDEP}]
	dev-python/mbf-genomics[${PYTHON_USEDEP}]
	dev-python/dppd-plotnine[${PYTHON_USEDEP}]
	doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
	doc? ( dev-python/sphinx-bootstrap-theme[${PYTHON_USEDEP}] )
	doc? ( dev-python/numpydoc[${PYTHON_USEDEP}] )
	testing? ( dev-python/pytest[${PYTHON_USEDEP}] )
	testing? ( dev-python/pytest-cov[${PYTHON_USEDEP}] )
	testing? ( dev-python/cutadapt[${PYTHON_USEDEP}] )
	testing? ( dev-python/pysam[${PYTHON_USEDEP}] )
	testing? ( dev-python/requests-mock[${PYTHON_USEDEP}] )
	testing? ( dev-python/mbf-externals[${PYTHON_USEDEP}] )
	testing? ( dev-python/mbf-sampledata[${PYTHON_USEDEP}] )
	testing? ( dev-python/mbf-qualitycontrol[${PYTHON_USEDEP}] )

BDEPEND

dev-python/pandas[${PYTHON_USEDEP}]
	dev-python/requests[${PYTHON_USEDEP}]
	dev-python/pypipegraph[${PYTHON_USEDEP}]
	dev-python/cython[${PYTHON_USEDEP}]
	dev-python/mbf-externals[${PYTHON_USEDEP}]
	dev-python/mbf-bam[${PYTHON_USEDEP}]
	dev-python/mbf-genomics[${PYTHON_USEDEP}]
	dev-python/dppd-plotnine[${PYTHON_USEDEP}]
	doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
	doc? ( dev-python/sphinx-bootstrap-theme[${PYTHON_USEDEP}] )
	doc? ( dev-python/numpydoc[${PYTHON_USEDEP}] )
	testing? ( dev-python/pytest[${PYTHON_USEDEP}] )
	testing? ( dev-python/pytest-cov[${PYTHON_USEDEP}] )
	testing? ( dev-python/cutadapt[${PYTHON_USEDEP}] )
	testing? ( dev-python/pysam[${PYTHON_USEDEP}] )
	testing? ( dev-python/requests-mock[${PYTHON_USEDEP}] )
	testing? ( dev-python/mbf-externals[${PYTHON_USEDEP}] )
	testing? ( dev-python/mbf-sampledata[${PYTHON_USEDEP}] )
	testing? ( dev-python/mbf-qualitycontrol[${PYTHON_USEDEP}] )