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dev-python/nanome-jax - 2.0.11 (pypi)

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Package Information

Description:
NANOME (Nanopore methylation) pipeline developed by Li Lab at The Jackson Laboratory
Homepage:
https://github.com/LabShengLi/nanome
License:
MIT

Ebuild Details

Version EAPI Keywords Slot
2.0.11 8 ~amd64 ~x86 0
View Raw Ebuild 
# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="NANOME (Nanopore methylation) pipeline developed by Li Lab at The Jackson Laboratory"

HOMEPAGE="https://github.com/LabShengLi/nanome"
LICENSE="MIT"
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE=""
DEPENDENCIES="dev-python/biopython[${PYTHON_USEDEP}]
	dev-python/pybedtools[${PYTHON_USEDEP}]
	dev-python/pandas[${PYTHON_USEDEP}]
	dev-python/seaborn[${PYTHON_USEDEP}]
	dev-python/scipy[${PYTHON_USEDEP}]
	dev-python/numpy[${PYTHON_USEDEP}]
	dev-python/statsmodels[${PYTHON_USEDEP}]
	dev-python/scikit-learn[${PYTHON_USEDEP}]
	dev-python/matplotlib[${PYTHON_USEDEP}]
	dev-python/jinja2[${PYTHON_USEDEP}]
	dev-python/openpyxl[${PYTHON_USEDEP}]
	dev-python/h5py[${PYTHON_USEDEP}]
	dev-python/tqdm[${PYTHON_USEDEP}]
	dev-python/joblib[${PYTHON_USEDEP}]
	dev-python/psutil[${PYTHON_USEDEP}]
	dev-python/xgboost[${PYTHON_USEDEP}]
	dev-python/pytabix[${PYTHON_USEDEP}]
	dev-python/pysam[${PYTHON_USEDEP}]
	dev-python/ont-fast5-api[${PYTHON_USEDEP}]"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"

Dependencies

RDEPEND

dev-python/biopython[${PYTHON_USEDEP}]
	dev-python/pybedtools[${PYTHON_USEDEP}]
	dev-python/pandas[${PYTHON_USEDEP}]
	dev-python/seaborn[${PYTHON_USEDEP}]
	dev-python/scipy[${PYTHON_USEDEP}]
	dev-python/numpy[${PYTHON_USEDEP}]
	dev-python/statsmodels[${PYTHON_USEDEP}]
	dev-python/scikit-learn[${PYTHON_USEDEP}]
	dev-python/matplotlib[${PYTHON_USEDEP}]
	dev-python/jinja2[${PYTHON_USEDEP}]
	dev-python/openpyxl[${PYTHON_USEDEP}]
	dev-python/h5py[${PYTHON_USEDEP}]
	dev-python/tqdm[${PYTHON_USEDEP}]
	dev-python/joblib[${PYTHON_USEDEP}]
	dev-python/psutil[${PYTHON_USEDEP}]
	dev-python/xgboost[${PYTHON_USEDEP}]
	dev-python/pytabix[${PYTHON_USEDEP}]
	dev-python/pysam[${PYTHON_USEDEP}]
	dev-python/ont-fast5-api[${PYTHON_USEDEP}]

BDEPEND

dev-python/biopython[${PYTHON_USEDEP}]
	dev-python/pybedtools[${PYTHON_USEDEP}]
	dev-python/pandas[${PYTHON_USEDEP}]
	dev-python/seaborn[${PYTHON_USEDEP}]
	dev-python/scipy[${PYTHON_USEDEP}]
	dev-python/numpy[${PYTHON_USEDEP}]
	dev-python/statsmodels[${PYTHON_USEDEP}]
	dev-python/scikit-learn[${PYTHON_USEDEP}]
	dev-python/matplotlib[${PYTHON_USEDEP}]
	dev-python/jinja2[${PYTHON_USEDEP}]
	dev-python/openpyxl[${PYTHON_USEDEP}]
	dev-python/h5py[${PYTHON_USEDEP}]
	dev-python/tqdm[${PYTHON_USEDEP}]
	dev-python/joblib[${PYTHON_USEDEP}]
	dev-python/psutil[${PYTHON_USEDEP}]
	dev-python/xgboost[${PYTHON_USEDEP}]
	dev-python/pytabix[${PYTHON_USEDEP}]
	dev-python/pysam[${PYTHON_USEDEP}]
	dev-python/ont-fast5-api[${PYTHON_USEDEP}]

Manifest for 2.0.11

Type File Size Source URLs
DIST nanome-jax-2.0.11.tar.gz 2802573 bytes https://files.pythonhosted.org/packages/source/${REALNAME::1}/nanome-jax/nanome-jax-2.0.11.tar.gz