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dev-python/pyabc - 0.12.16 (pypi)

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Package Information

Description:
Distributed, likelihood-free ABC-SMC inference
Homepage:
https://github.com/icb-dcm/pyabc
License:
BSD

Ebuild Details

Version EAPI Keywords Slot
0.12.16 8 ~amd64 ~x86 0
View Raw Ebuild 
# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="Distributed, likelihood-free ABC-SMC inference"

HOMEPAGE="https://github.com/icb-dcm/pyabc"
LICENSE="BSD"
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE="amici autograd copasi doc examples julia migrate ot petab plotly pyarrow r test test-petab webserver-dash webserver-flask yaml2sbml"
DEPENDENCIES=">=dev-python/numpy-1.23.5[${PYTHON_USEDEP}]
	>=dev-python/scipy-1.5.2[${PYTHON_USEDEP}]
	>=dev-python/pandas-2.0.1[${PYTHON_USEDEP}]
	>=dev-python/cloudpickle-1.5.0[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-0.23.1[${PYTHON_USEDEP}]
	>=dev-python/click-7.1.2[${PYTHON_USEDEP}]
	>=dev-python/redis-2.10.6[${PYTHON_USEDEP}]
	dev-python/distributed[${PYTHON_USEDEP}]
	>=dev-python/matplotlib-3.3.0[${PYTHON_USEDEP}]
	dev-python/sqlalchemy[${PYTHON_USEDEP}]
	dev-python/jabbar[${PYTHON_USEDEP}]
	>=dev-python/gitpython-3.1.7[${PYTHON_USEDEP}]
	webserver-flask? ( dev-python/Flask-Bootstrap[${PYTHON_USEDEP}] )
	webserver-flask? ( >=dev-python/flask-1.1.2[${PYTHON_USEDEP}] )
	webserver-flask? ( dev-python/bokeh[${PYTHON_USEDEP}] )
	webserver-dash? ( dev-python/dash[${PYTHON_USEDEP}] )
	webserver-dash? ( dev-python/dash-bootstrap-components[${PYTHON_USEDEP}] )
	pyarrow? ( >=dev-python/pyarrow-6.0.0[${PYTHON_USEDEP}] )
	r? ( >=dev-python/rpy2-3.4.4[${PYTHON_USEDEP}] )
	r? ( >=dev-python/cffi-1.14.5[${PYTHON_USEDEP}] )
	r? ( >=dev-python/ipython-7.18.1[${PYTHON_USEDEP}] )
	r? ( >=dev-python/pygments-2.6.1[${PYTHON_USEDEP}] )
	julia? ( dev-python/julia[${PYTHON_USEDEP}] )
	julia? ( >=dev-python/pygments-2.6.1[${PYTHON_USEDEP}] )
	copasi? ( dev-python/copasi-basico[${PYTHON_USEDEP}] )
	ot? ( dev-python/POT[${PYTHON_USEDEP}] )
	petab? ( dev-python/petab[${PYTHON_USEDEP}] )
	amici? ( dev-python/amici[${PYTHON_USEDEP}] )
	yaml2sbml? ( dev-python/yaml2sbml[${PYTHON_USEDEP}] )
	migrate? ( >=dev-python/alembic-1.5.4[${PYTHON_USEDEP}] )
	plotly? ( >=dev-python/plotly-5.3.1[${PYTHON_USEDEP}] )
	plotly? ( dev-python/kaleido[${PYTHON_USEDEP}] )
	autograd? ( dev-python/autograd[${PYTHON_USEDEP}] )
	examples? ( >=dev-python/notebook-6.1.4[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/sphinx-8.1.3[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/nbsphinx-0.9.5[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/nbconvert-7.16.4[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/sphinx-rtd-theme-1.2.0[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/sphinx-autodoc-typehints-1.18.3[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/ipython-8.4.0[${PYTHON_USEDEP}] )
	test? ( >=dev-python/pytest-5.4.3[${PYTHON_USEDEP}] )
	test? ( >=dev-python/pytest-cov-2.10.0[${PYTHON_USEDEP}] )
	test? ( >=dev-python/pytest-rerunfailures-9.1.1[${PYTHON_USEDEP}] )
	test-petab? ( dev-python/petabtests[${PYTHON_USEDEP}] )"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"

USE Flags

amici
autograd
copasi
doc
examples
julia
migrate
ot
petab
plotly
pyarrow
r
test
test-petab
webserver-dash
webserver-flask
yaml2sbml

Dependencies

RDEPEND

>=dev-python/numpy-1.23.5[${PYTHON_USEDEP}]
	>=dev-python/scipy-1.5.2[${PYTHON_USEDEP}]
	>=dev-python/pandas-2.0.1[${PYTHON_USEDEP}]
	>=dev-python/cloudpickle-1.5.0[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-0.23.1[${PYTHON_USEDEP}]
	>=dev-python/click-7.1.2[${PYTHON_USEDEP}]
	>=dev-python/redis-2.10.6[${PYTHON_USEDEP}]
	dev-python/distributed[${PYTHON_USEDEP}]
	>=dev-python/matplotlib-3.3.0[${PYTHON_USEDEP}]
	dev-python/sqlalchemy[${PYTHON_USEDEP}]
	dev-python/jabbar[${PYTHON_USEDEP}]
	>=dev-python/gitpython-3.1.7[${PYTHON_USEDEP}]
	webserver-flask? ( dev-python/Flask-Bootstrap[${PYTHON_USEDEP}] )
	webserver-flask? ( >=dev-python/flask-1.1.2[${PYTHON_USEDEP}] )
	webserver-flask? ( dev-python/bokeh[${PYTHON_USEDEP}] )
	webserver-dash? ( dev-python/dash[${PYTHON_USEDEP}] )
	webserver-dash? ( dev-python/dash-bootstrap-components[${PYTHON_USEDEP}] )
	pyarrow? ( >=dev-python/pyarrow-6.0.0[${PYTHON_USEDEP}] )
	r? ( >=dev-python/rpy2-3.4.4[${PYTHON_USEDEP}] )
	r? ( >=dev-python/cffi-1.14.5[${PYTHON_USEDEP}] )
	r? ( >=dev-python/ipython-7.18.1[${PYTHON_USEDEP}] )
	r? ( >=dev-python/pygments-2.6.1[${PYTHON_USEDEP}] )
	julia? ( dev-python/julia[${PYTHON_USEDEP}] )
	julia? ( >=dev-python/pygments-2.6.1[${PYTHON_USEDEP}] )
	copasi? ( dev-python/copasi-basico[${PYTHON_USEDEP}] )
	ot? ( dev-python/POT[${PYTHON_USEDEP}] )
	petab? ( dev-python/petab[${PYTHON_USEDEP}] )
	amici? ( dev-python/amici[${PYTHON_USEDEP}] )
	yaml2sbml? ( dev-python/yaml2sbml[${PYTHON_USEDEP}] )
	migrate? ( >=dev-python/alembic-1.5.4[${PYTHON_USEDEP}] )
	plotly? ( >=dev-python/plotly-5.3.1[${PYTHON_USEDEP}] )
	plotly? ( dev-python/kaleido[${PYTHON_USEDEP}] )
	autograd? ( dev-python/autograd[${PYTHON_USEDEP}] )
	examples? ( >=dev-python/notebook-6.1.4[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/sphinx-8.1.3[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/nbsphinx-0.9.5[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/nbconvert-7.16.4[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/sphinx-rtd-theme-1.2.0[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/sphinx-autodoc-typehints-1.18.3[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/ipython-8.4.0[${PYTHON_USEDEP}] )
	test? ( >=dev-python/pytest-5.4.3[${PYTHON_USEDEP}] )
	test? ( >=dev-python/pytest-cov-2.10.0[${PYTHON_USEDEP}] )
	test? ( >=dev-python/pytest-rerunfailures-9.1.1[${PYTHON_USEDEP}] )
	test-petab? ( dev-python/petabtests[${PYTHON_USEDEP}] )

BDEPEND

>=dev-python/numpy-1.23.5[${PYTHON_USEDEP}]
	>=dev-python/scipy-1.5.2[${PYTHON_USEDEP}]
	>=dev-python/pandas-2.0.1[${PYTHON_USEDEP}]
	>=dev-python/cloudpickle-1.5.0[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-0.23.1[${PYTHON_USEDEP}]
	>=dev-python/click-7.1.2[${PYTHON_USEDEP}]
	>=dev-python/redis-2.10.6[${PYTHON_USEDEP}]
	dev-python/distributed[${PYTHON_USEDEP}]
	>=dev-python/matplotlib-3.3.0[${PYTHON_USEDEP}]
	dev-python/sqlalchemy[${PYTHON_USEDEP}]
	dev-python/jabbar[${PYTHON_USEDEP}]
	>=dev-python/gitpython-3.1.7[${PYTHON_USEDEP}]
	webserver-flask? ( dev-python/Flask-Bootstrap[${PYTHON_USEDEP}] )
	webserver-flask? ( >=dev-python/flask-1.1.2[${PYTHON_USEDEP}] )
	webserver-flask? ( dev-python/bokeh[${PYTHON_USEDEP}] )
	webserver-dash? ( dev-python/dash[${PYTHON_USEDEP}] )
	webserver-dash? ( dev-python/dash-bootstrap-components[${PYTHON_USEDEP}] )
	pyarrow? ( >=dev-python/pyarrow-6.0.0[${PYTHON_USEDEP}] )
	r? ( >=dev-python/rpy2-3.4.4[${PYTHON_USEDEP}] )
	r? ( >=dev-python/cffi-1.14.5[${PYTHON_USEDEP}] )
	r? ( >=dev-python/ipython-7.18.1[${PYTHON_USEDEP}] )
	r? ( >=dev-python/pygments-2.6.1[${PYTHON_USEDEP}] )
	julia? ( dev-python/julia[${PYTHON_USEDEP}] )
	julia? ( >=dev-python/pygments-2.6.1[${PYTHON_USEDEP}] )
	copasi? ( dev-python/copasi-basico[${PYTHON_USEDEP}] )
	ot? ( dev-python/POT[${PYTHON_USEDEP}] )
	petab? ( dev-python/petab[${PYTHON_USEDEP}] )
	amici? ( dev-python/amici[${PYTHON_USEDEP}] )
	yaml2sbml? ( dev-python/yaml2sbml[${PYTHON_USEDEP}] )
	migrate? ( >=dev-python/alembic-1.5.4[${PYTHON_USEDEP}] )
	plotly? ( >=dev-python/plotly-5.3.1[${PYTHON_USEDEP}] )
	plotly? ( dev-python/kaleido[${PYTHON_USEDEP}] )
	autograd? ( dev-python/autograd[${PYTHON_USEDEP}] )
	examples? ( >=dev-python/notebook-6.1.4[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/sphinx-8.1.3[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/nbsphinx-0.9.5[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/nbconvert-7.16.4[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/sphinx-rtd-theme-1.2.0[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/sphinx-autodoc-typehints-1.18.3[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/ipython-8.4.0[${PYTHON_USEDEP}] )
	test? ( >=dev-python/pytest-5.4.3[${PYTHON_USEDEP}] )
	test? ( >=dev-python/pytest-cov-2.10.0[${PYTHON_USEDEP}] )
	test? ( >=dev-python/pytest-rerunfailures-9.1.1[${PYTHON_USEDEP}] )
	test-petab? ( dev-python/petabtests[${PYTHON_USEDEP}] )

Manifest for 0.12.16

Type File Size Source URLs
DIST pyabc-0.12.16.tar.gz 282555 bytes https://files.pythonhosted.org/packages/source/${REALNAME::1}/pyabc/pyabc-0.12.16.tar.gz