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dev-python/pyscenic - 0.12.1 (pypi)

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Package Information

Description:
Python implementation of the SCENIC pipeline for transcription factor inference from single-cell transcriptomics experiments.
Homepage:
https://github.com/aertslab/pySCENIC
License:
GPL-3+

Ebuild Details

Version EAPI Keywords Slot
0.12.1 8 ~amd64 ~x86 0
View Raw Ebuild 
# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="Python implementation of the SCENIC pipeline for transcription factor inference from single-cell transcriptomics experiments."

HOMEPAGE="https://github.com/aertslab/pySCENIC"
LICENSE="GPL-3+"
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE=""
DEPENDENCIES="dev-python/ctxcore[${PYTHON_USEDEP}]
	dev-python/cytoolz[${PYTHON_USEDEP}]
	dev-python/multiprocessing_on_dill[${PYTHON_USEDEP}]
	dev-python/llvmlite[${PYTHON_USEDEP}]
	dev-python/numba[${PYTHON_USEDEP}]
	dev-python/attrs[${PYTHON_USEDEP}]
	dev-python/frozendict[${PYTHON_USEDEP}]
	dev-python/numpy[${PYTHON_USEDEP}]
	>=dev-python/pandas-1.3.5[${PYTHON_USEDEP}]
	dev-python/numexpr[${PYTHON_USEDEP}]
	dev-python/cloudpickle[${PYTHON_USEDEP}]
	dev-python/dask[${PYTHON_USEDEP}]
	dev-python/distributed[${PYTHON_USEDEP}]
	dev-python/arboreto[${PYTHON_USEDEP}]
	dev-python/boltons[${PYTHON_USEDEP}]
	dev-python/setuptools[${PYTHON_USEDEP}]
	dev-python/pyyaml[${PYTHON_USEDEP}]
	dev-python/tqdm[${PYTHON_USEDEP}]
	dev-python/interlap[${PYTHON_USEDEP}]
	dev-python/umap-learn[${PYTHON_USEDEP}]
	dev-python/loompy[${PYTHON_USEDEP}]
	dev-python/networkx[${PYTHON_USEDEP}]
	dev-python/scipy[${PYTHON_USEDEP}]
	dev-python/fsspec[${PYTHON_USEDEP}]
	dev-python/requests[${PYTHON_USEDEP}]
	dev-python/aiohttp[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-0.22.2[${PYTHON_USEDEP}]"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"

Dependencies

RDEPEND

dev-python/ctxcore[${PYTHON_USEDEP}]
	dev-python/cytoolz[${PYTHON_USEDEP}]
	dev-python/multiprocessing_on_dill[${PYTHON_USEDEP}]
	dev-python/llvmlite[${PYTHON_USEDEP}]
	dev-python/numba[${PYTHON_USEDEP}]
	dev-python/attrs[${PYTHON_USEDEP}]
	dev-python/frozendict[${PYTHON_USEDEP}]
	dev-python/numpy[${PYTHON_USEDEP}]
	>=dev-python/pandas-1.3.5[${PYTHON_USEDEP}]
	dev-python/numexpr[${PYTHON_USEDEP}]
	dev-python/cloudpickle[${PYTHON_USEDEP}]
	dev-python/dask[${PYTHON_USEDEP}]
	dev-python/distributed[${PYTHON_USEDEP}]
	dev-python/arboreto[${PYTHON_USEDEP}]
	dev-python/boltons[${PYTHON_USEDEP}]
	dev-python/setuptools[${PYTHON_USEDEP}]
	dev-python/pyyaml[${PYTHON_USEDEP}]
	dev-python/tqdm[${PYTHON_USEDEP}]
	dev-python/interlap[${PYTHON_USEDEP}]
	dev-python/umap-learn[${PYTHON_USEDEP}]
	dev-python/loompy[${PYTHON_USEDEP}]
	dev-python/networkx[${PYTHON_USEDEP}]
	dev-python/scipy[${PYTHON_USEDEP}]
	dev-python/fsspec[${PYTHON_USEDEP}]
	dev-python/requests[${PYTHON_USEDEP}]
	dev-python/aiohttp[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-0.22.2[${PYTHON_USEDEP}]

BDEPEND

dev-python/ctxcore[${PYTHON_USEDEP}]
	dev-python/cytoolz[${PYTHON_USEDEP}]
	dev-python/multiprocessing_on_dill[${PYTHON_USEDEP}]
	dev-python/llvmlite[${PYTHON_USEDEP}]
	dev-python/numba[${PYTHON_USEDEP}]
	dev-python/attrs[${PYTHON_USEDEP}]
	dev-python/frozendict[${PYTHON_USEDEP}]
	dev-python/numpy[${PYTHON_USEDEP}]
	>=dev-python/pandas-1.3.5[${PYTHON_USEDEP}]
	dev-python/numexpr[${PYTHON_USEDEP}]
	dev-python/cloudpickle[${PYTHON_USEDEP}]
	dev-python/dask[${PYTHON_USEDEP}]
	dev-python/distributed[${PYTHON_USEDEP}]
	dev-python/arboreto[${PYTHON_USEDEP}]
	dev-python/boltons[${PYTHON_USEDEP}]
	dev-python/setuptools[${PYTHON_USEDEP}]
	dev-python/pyyaml[${PYTHON_USEDEP}]
	dev-python/tqdm[${PYTHON_USEDEP}]
	dev-python/interlap[${PYTHON_USEDEP}]
	dev-python/umap-learn[${PYTHON_USEDEP}]
	dev-python/loompy[${PYTHON_USEDEP}]
	dev-python/networkx[${PYTHON_USEDEP}]
	dev-python/scipy[${PYTHON_USEDEP}]
	dev-python/fsspec[${PYTHON_USEDEP}]
	dev-python/requests[${PYTHON_USEDEP}]
	dev-python/aiohttp[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-0.22.2[${PYTHON_USEDEP}]

Manifest for 0.12.1

Type File Size Source URLs
DIST pyscenic-0.12.1.tar.gz 7028054 bytes https://files.pythonhosted.org/packages/source/${REALNAME::1}/pyscenic/pyscenic-0.12.1.tar.gz