Gentoo Packages

# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="A simple tool to identify and clean misassemblies for ancient metagenomics"

HOMEPAGE="https://github.com/genomewalker/refine-contigs"
LICENSE="GNUv3"
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE=""
DEPENDENCIES="<=dev-python/pandas-1.2.0[${PYTHON_USEDEP}]
	>=dev-python/scipy-1.5.2[${PYTHON_USEDEP}]
	>=dev-python/networkx-2.5[${PYTHON_USEDEP}]
	~dev-python/tqdm-4.50.0[${PYTHON_USEDEP}]
	>=dev-python/pyyaml-5.4[${PYTHON_USEDEP}]
	dev-python/biopython[${PYTHON_USEDEP}]
	dev-python/pyfaidx[${PYTHON_USEDEP}]
	dev-python/pyranges[${PYTHON_USEDEP}]
	dev-python/ncls[${PYTHON_USEDEP}]
	dev-python/datatable[${PYTHON_USEDEP}]"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"