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dev-python/scETM - 0.5.0 (pypi)

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Package Information

Description:
Single cell embedded topic model for integrated scRNA-seq data analysis.
Homepage:
https://github.com/hui2000ji/scETM/
License:
BSD 3-Clause License

Ebuild Details

Version EAPI Keywords Slot
0.5.0 8 ~amd64 ~x86 0
View Raw Ebuild 
# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="Single cell embedded topic model for integrated scRNA-seq data analysis."

HOMEPAGE="https://github.com/hui2000ji/scETM/"
LICENSE="BSD 3-Clause License"
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE=""
DEPENDENCIES="dev-python/torch[${PYTHON_USEDEP}]
	>=dev-python/numpy-1.16.2[${PYTHON_USEDEP}]
	>=dev-python/matplotlib-3.1.2[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-0.20.3[${PYTHON_USEDEP}]
	>=dev-python/h5py-2.9.0[${PYTHON_USEDEP}]
	>=dev-python/pandas-0.25[${PYTHON_USEDEP}]
	>=dev-python/tqdm-4.31.1[${PYTHON_USEDEP}]
	dev-python/anndata[${PYTHON_USEDEP}]
	dev-python/scanpy[${PYTHON_USEDEP}]
	>=dev-python/scipy-1.0[${PYTHON_USEDEP}]
	dev-python/louvain[${PYTHON_USEDEP}]
	dev-python/leidenalg[${PYTHON_USEDEP}]
	dev-python/psutil[${PYTHON_USEDEP}]"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"

Dependencies

RDEPEND

dev-python/torch[${PYTHON_USEDEP}]
	>=dev-python/numpy-1.16.2[${PYTHON_USEDEP}]
	>=dev-python/matplotlib-3.1.2[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-0.20.3[${PYTHON_USEDEP}]
	>=dev-python/h5py-2.9.0[${PYTHON_USEDEP}]
	>=dev-python/pandas-0.25[${PYTHON_USEDEP}]
	>=dev-python/tqdm-4.31.1[${PYTHON_USEDEP}]
	dev-python/anndata[${PYTHON_USEDEP}]
	dev-python/scanpy[${PYTHON_USEDEP}]
	>=dev-python/scipy-1.0[${PYTHON_USEDEP}]
	dev-python/louvain[${PYTHON_USEDEP}]
	dev-python/leidenalg[${PYTHON_USEDEP}]
	dev-python/psutil[${PYTHON_USEDEP}]

BDEPEND

dev-python/torch[${PYTHON_USEDEP}]
	>=dev-python/numpy-1.16.2[${PYTHON_USEDEP}]
	>=dev-python/matplotlib-3.1.2[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-0.20.3[${PYTHON_USEDEP}]
	>=dev-python/h5py-2.9.0[${PYTHON_USEDEP}]
	>=dev-python/pandas-0.25[${PYTHON_USEDEP}]
	>=dev-python/tqdm-4.31.1[${PYTHON_USEDEP}]
	dev-python/anndata[${PYTHON_USEDEP}]
	dev-python/scanpy[${PYTHON_USEDEP}]
	>=dev-python/scipy-1.0[${PYTHON_USEDEP}]
	dev-python/louvain[${PYTHON_USEDEP}]
	dev-python/leidenalg[${PYTHON_USEDEP}]
	dev-python/psutil[${PYTHON_USEDEP}]

Manifest for 0.5.0

Type File Size Source URLs
DIST scETM-0.5.0.tar.gz 35866 bytes https://files.pythonhosted.org/packages/source/${REALNAME::1}/scETM/scETM-0.5.0.tar.gz