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dev-python/scgpt - 0.2.4 (pypi)

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Package Information

Description:
Large-scale generative pretrain of single cell using transformer.
Homepage:
https://github.com/bowang-lab/scGPT
License:
MIT

Ebuild Details

Version EAPI Keywords Slot
0.2.4 8 ~amd64 ~x86 0
View Raw Ebuild 
# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="Large-scale generative pretrain of single cell using transformer."

HOMEPAGE="https://github.com/bowang-lab/scGPT"
LICENSE="MIT"
SRC_URI="https://files.pythonhosted.org/packages/f4/06/ed1d337b5bfc4159ca4ff1134b2f0d9798373fa6316799d06cf7b8872347/scGPT-${REALVERSION}.tar.gz"
SOURCEFILE="scGPT-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE=""
DEPENDENCIES=">=dev-python/pandas-1.3.5[${PYTHON_USEDEP}]
	dev-python/scvi-tools[${PYTHON_USEDEP}]
	dev-python/scanpy[${PYTHON_USEDEP}]
	dev-python/torch[${PYTHON_USEDEP}]
	dev-python/torchtext[${PYTHON_USEDEP}]
	dev-python/numba[${PYTHON_USEDEP}]
	dev-python/scikit-misc[${PYTHON_USEDEP}]
	dev-python/umap-learn[${PYTHON_USEDEP}]
	dev-python/leidenalg[${PYTHON_USEDEP}]
	dev-python/datasets[${PYTHON_USEDEP}]
	<dev-python/typing-extensions-5.0.0[${PYTHON_USEDEP}]
	dev-python/scib[${PYTHON_USEDEP}]
	dev-python/cell-gears[${PYTHON_USEDEP}]
	dev-python/orbax[${PYTHON_USEDEP}]"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"

Dependencies

RDEPEND

>=dev-python/pandas-1.3.5[${PYTHON_USEDEP}]
	dev-python/scvi-tools[${PYTHON_USEDEP}]
	dev-python/scanpy[${PYTHON_USEDEP}]
	dev-python/torch[${PYTHON_USEDEP}]
	dev-python/torchtext[${PYTHON_USEDEP}]
	dev-python/numba[${PYTHON_USEDEP}]
	dev-python/scikit-misc[${PYTHON_USEDEP}]
	dev-python/umap-learn[${PYTHON_USEDEP}]
	dev-python/leidenalg[${PYTHON_USEDEP}]
	dev-python/datasets[${PYTHON_USEDEP}]
	<dev-python/typing-extensions-5.0.0[${PYTHON_USEDEP}]
	dev-python/scib[${PYTHON_USEDEP}]
	dev-python/cell-gears[${PYTHON_USEDEP}]
	dev-python/orbax[${PYTHON_USEDEP}]

BDEPEND

>=dev-python/pandas-1.3.5[${PYTHON_USEDEP}]
	dev-python/scvi-tools[${PYTHON_USEDEP}]
	dev-python/scanpy[${PYTHON_USEDEP}]
	dev-python/torch[${PYTHON_USEDEP}]
	dev-python/torchtext[${PYTHON_USEDEP}]
	dev-python/numba[${PYTHON_USEDEP}]
	dev-python/scikit-misc[${PYTHON_USEDEP}]
	dev-python/umap-learn[${PYTHON_USEDEP}]
	dev-python/leidenalg[${PYTHON_USEDEP}]
	dev-python/datasets[${PYTHON_USEDEP}]
	<dev-python/typing-extensions-5.0.0[${PYTHON_USEDEP}]
	dev-python/scib[${PYTHON_USEDEP}]
	dev-python/cell-gears[${PYTHON_USEDEP}]
	dev-python/orbax[${PYTHON_USEDEP}]

Manifest for 0.2.4

Type File Size Source URLs
DIST scGPT-0.2.4.tar.gz 812630 bytes https://files.pythonhosted.org/packages/f4/06/ed1d337b5bfc4159ca4ff1134b2f0d9798373fa6316799d06cf7b8872347/scGPT-0.2.4.tar.gz