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dev-python/scib - 1.1.7 (pypi)

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Package Information

Description:
Evaluating single-cell data integration methods
Homepage:
https://github.com/theislab/scib
License:
MIT

Ebuild Details

Version EAPI Keywords Slot
1.1.7 8 ~amd64 ~x86 0
View Raw Ebuild 
# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="Evaluating single-cell data integration methods"

HOMEPAGE="https://github.com/theislab/scib"
LICENSE="MIT"
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE="bbknn desc dev docs harmony louvain mnn rpy2 scanorama scgen scvi test trvae trvaep"
DEPENDENCIES="dev-python/numpy[${PYTHON_USEDEP}]
	>=dev-python/pandas-2.0[${PYTHON_USEDEP}]
	dev-python/seaborn[${PYTHON_USEDEP}]
	dev-python/matplotlib[${PYTHON_USEDEP}]
	dev-python/numba[${PYTHON_USEDEP}]
	dev-python/scanpy[${PYTHON_USEDEP}]
	dev-python/anndata[${PYTHON_USEDEP}]
	dev-python/h5py[${PYTHON_USEDEP}]
	dev-python/scipy[${PYTHON_USEDEP}]
	dev-python/scikit-learn[${PYTHON_USEDEP}]
	dev-python/scikit-misc[${PYTHON_USEDEP}]
	dev-python/leidenalg[${PYTHON_USEDEP}]
	dev-python/umap-learn[${PYTHON_USEDEP}]
	dev-python/pydot[${PYTHON_USEDEP}]
	dev-python/igraph[${PYTHON_USEDEP}]
	dev-python/llvmlite[${PYTHON_USEDEP}]
	dev-python/deprecated[${PYTHON_USEDEP}]
	rpy2? ( >=dev-python/rpy2-3.0[${PYTHON_USEDEP}] )
	rpy2? ( dev-python/anndata2ri[${PYTHON_USEDEP}] )
	test? ( dev-python/pytest[${PYTHON_USEDEP}] )
	test? ( dev-python/pytest-icdiff[${PYTHON_USEDEP}] )
	test? ( dev-python/pytest-cov[${PYTHON_USEDEP}] )
	test? ( dev-python/codecov[${PYTHON_USEDEP}] )
	dev? ( dev-python/build[${PYTHON_USEDEP}] )
	dev? ( dev-python/twine[${PYTHON_USEDEP}] )
	dev? ( dev-python/isort[${PYTHON_USEDEP}] )
	dev? ( dev-python/bump2version[${PYTHON_USEDEP}] )
	dev? ( dev-python/pre-commit[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx-rtd-theme[${PYTHON_USEDEP}] )
	docs? ( dev-python/myst-parser[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx-automodapi[${PYTHON_USEDEP}] )
	louvain? ( dev-python/igraph[${PYTHON_USEDEP}] )
	louvain? ( dev-python/louvain[${PYTHON_USEDEP}] )
	bbknn? ( dev-python/bbknn[${PYTHON_USEDEP}] )
	scanorama? ( dev-python/scanorama[${PYTHON_USEDEP}] )
	mnn? ( dev-python/mnnpy[${PYTHON_USEDEP}] )
	scgen? ( dev-python/scgen[${PYTHON_USEDEP}] )
	scvi? ( dev-python/scvi-tools[${PYTHON_USEDEP}] )
	trvae? ( dev-python/trvae[${PYTHON_USEDEP}] )
	trvaep? ( dev-python/trvaep[${PYTHON_USEDEP}] )
	desc? ( dev-python/desc[${PYTHON_USEDEP}] )
	harmony? ( dev-python/harmony-pytorch[${PYTHON_USEDEP}] )"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"

USE Flags

bbknn
desc
dev
docs
harmony
louvain
mnn
rpy2
scanorama
scgen
scvi
test
trvae
trvaep

Dependencies

RDEPEND

dev-python/numpy[${PYTHON_USEDEP}]
	>=dev-python/pandas-2.0[${PYTHON_USEDEP}]
	dev-python/seaborn[${PYTHON_USEDEP}]
	dev-python/matplotlib[${PYTHON_USEDEP}]
	dev-python/numba[${PYTHON_USEDEP}]
	dev-python/scanpy[${PYTHON_USEDEP}]
	dev-python/anndata[${PYTHON_USEDEP}]
	dev-python/h5py[${PYTHON_USEDEP}]
	dev-python/scipy[${PYTHON_USEDEP}]
	dev-python/scikit-learn[${PYTHON_USEDEP}]
	dev-python/scikit-misc[${PYTHON_USEDEP}]
	dev-python/leidenalg[${PYTHON_USEDEP}]
	dev-python/umap-learn[${PYTHON_USEDEP}]
	dev-python/pydot[${PYTHON_USEDEP}]
	dev-python/igraph[${PYTHON_USEDEP}]
	dev-python/llvmlite[${PYTHON_USEDEP}]
	dev-python/deprecated[${PYTHON_USEDEP}]
	rpy2? ( >=dev-python/rpy2-3.0[${PYTHON_USEDEP}] )
	rpy2? ( dev-python/anndata2ri[${PYTHON_USEDEP}] )
	test? ( dev-python/pytest[${PYTHON_USEDEP}] )
	test? ( dev-python/pytest-icdiff[${PYTHON_USEDEP}] )
	test? ( dev-python/pytest-cov[${PYTHON_USEDEP}] )
	test? ( dev-python/codecov[${PYTHON_USEDEP}] )
	dev? ( dev-python/build[${PYTHON_USEDEP}] )
	dev? ( dev-python/twine[${PYTHON_USEDEP}] )
	dev? ( dev-python/isort[${PYTHON_USEDEP}] )
	dev? ( dev-python/bump2version[${PYTHON_USEDEP}] )
	dev? ( dev-python/pre-commit[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx-rtd-theme[${PYTHON_USEDEP}] )
	docs? ( dev-python/myst-parser[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx-automodapi[${PYTHON_USEDEP}] )
	louvain? ( dev-python/igraph[${PYTHON_USEDEP}] )
	louvain? ( dev-python/louvain[${PYTHON_USEDEP}] )
	bbknn? ( dev-python/bbknn[${PYTHON_USEDEP}] )
	scanorama? ( dev-python/scanorama[${PYTHON_USEDEP}] )
	mnn? ( dev-python/mnnpy[${PYTHON_USEDEP}] )
	scgen? ( dev-python/scgen[${PYTHON_USEDEP}] )
	scvi? ( dev-python/scvi-tools[${PYTHON_USEDEP}] )
	trvae? ( dev-python/trvae[${PYTHON_USEDEP}] )
	trvaep? ( dev-python/trvaep[${PYTHON_USEDEP}] )
	desc? ( dev-python/desc[${PYTHON_USEDEP}] )
	harmony? ( dev-python/harmony-pytorch[${PYTHON_USEDEP}] )

BDEPEND

dev-python/numpy[${PYTHON_USEDEP}]
	>=dev-python/pandas-2.0[${PYTHON_USEDEP}]
	dev-python/seaborn[${PYTHON_USEDEP}]
	dev-python/matplotlib[${PYTHON_USEDEP}]
	dev-python/numba[${PYTHON_USEDEP}]
	dev-python/scanpy[${PYTHON_USEDEP}]
	dev-python/anndata[${PYTHON_USEDEP}]
	dev-python/h5py[${PYTHON_USEDEP}]
	dev-python/scipy[${PYTHON_USEDEP}]
	dev-python/scikit-learn[${PYTHON_USEDEP}]
	dev-python/scikit-misc[${PYTHON_USEDEP}]
	dev-python/leidenalg[${PYTHON_USEDEP}]
	dev-python/umap-learn[${PYTHON_USEDEP}]
	dev-python/pydot[${PYTHON_USEDEP}]
	dev-python/igraph[${PYTHON_USEDEP}]
	dev-python/llvmlite[${PYTHON_USEDEP}]
	dev-python/deprecated[${PYTHON_USEDEP}]
	rpy2? ( >=dev-python/rpy2-3.0[${PYTHON_USEDEP}] )
	rpy2? ( dev-python/anndata2ri[${PYTHON_USEDEP}] )
	test? ( dev-python/pytest[${PYTHON_USEDEP}] )
	test? ( dev-python/pytest-icdiff[${PYTHON_USEDEP}] )
	test? ( dev-python/pytest-cov[${PYTHON_USEDEP}] )
	test? ( dev-python/codecov[${PYTHON_USEDEP}] )
	dev? ( dev-python/build[${PYTHON_USEDEP}] )
	dev? ( dev-python/twine[${PYTHON_USEDEP}] )
	dev? ( dev-python/isort[${PYTHON_USEDEP}] )
	dev? ( dev-python/bump2version[${PYTHON_USEDEP}] )
	dev? ( dev-python/pre-commit[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx-rtd-theme[${PYTHON_USEDEP}] )
	docs? ( dev-python/myst-parser[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx-automodapi[${PYTHON_USEDEP}] )
	louvain? ( dev-python/igraph[${PYTHON_USEDEP}] )
	louvain? ( dev-python/louvain[${PYTHON_USEDEP}] )
	bbknn? ( dev-python/bbknn[${PYTHON_USEDEP}] )
	scanorama? ( dev-python/scanorama[${PYTHON_USEDEP}] )
	mnn? ( dev-python/mnnpy[${PYTHON_USEDEP}] )
	scgen? ( dev-python/scgen[${PYTHON_USEDEP}] )
	scvi? ( dev-python/scvi-tools[${PYTHON_USEDEP}] )
	trvae? ( dev-python/trvae[${PYTHON_USEDEP}] )
	trvaep? ( dev-python/trvaep[${PYTHON_USEDEP}] )
	desc? ( dev-python/desc[${PYTHON_USEDEP}] )
	harmony? ( dev-python/harmony-pytorch[${PYTHON_USEDEP}] )

Manifest for 1.1.7

Type File Size Source URLs
DIST scib-1.1.7.tar.gz 78796 bytes https://files.pythonhosted.org/packages/source/${REALNAME::1}/scib/scib-1.1.7.tar.gz