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dev-python/scvi - 0.6.8 (pypi)

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Package Information

Description:
Single-cell Variational Inference
Homepage:
https://github.com/YosefLab/scVI
License:
MIT

Ebuild Details

Version EAPI Keywords Slot
0.6.8 8 ~amd64 ~x86 0
View Raw Ebuild 
# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="Single-cell Variational Inference"

HOMEPAGE="https://github.com/YosefLab/scVI"
LICENSE="MIT"
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE="docs notebooks test"
DEPENDENCIES=">=dev-python/numpy-1.16.2[${PYTHON_USEDEP}]
	dev-python/torch[${PYTHON_USEDEP}]
	>=dev-python/matplotlib-3.1.2[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-0.20.3[${PYTHON_USEDEP}]
	>=dev-python/h5py-2.9.0[${PYTHON_USEDEP}]
	>=dev-python/pandas-0.25[${PYTHON_USEDEP}]
	>=dev-python/tqdm-4.31.1[${PYTHON_USEDEP}]
	>=dev-python/xlrd-1.2.0[${PYTHON_USEDEP}]
	dev-python/hyperopt[${PYTHON_USEDEP}]
	dev-python/anndata[${PYTHON_USEDEP}]
	dev-python/scanpy[${PYTHON_USEDEP}]
	dev-python/scikit-misc[${PYTHON_USEDEP}]
	docs? ( >=dev-python/sphinx-2.0.1[${PYTHON_USEDEP}] )
	docs? ( dev-python/nbsphinx[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx-autodoc-typehints[${PYTHON_USEDEP}] )
	docs? ( >=dev-python/sphinx-rtd-theme-0.3.1[${PYTHON_USEDEP}] )
	docs? ( dev-python/autodocsumm[${PYTHON_USEDEP}] )
	docs? ( dev-python/nbsphinx-link[${PYTHON_USEDEP}] )
	docs? ( dev-python/scanpydoc[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx-automodapi[${PYTHON_USEDEP}] )
	notebooks? ( dev-python/louvain[${PYTHON_USEDEP}] )
	notebooks? ( dev-python/leidenalg[${PYTHON_USEDEP}] )
	notebooks? ( dev-python/python-igraph[${PYTHON_USEDEP}] )
	notebooks? ( >=dev-python/colour-0.1.5[${PYTHON_USEDEP}] )
	notebooks? ( dev-python/umap-learn[${PYTHON_USEDEP}] )
	notebooks? ( >=dev-python/seaborn-0.9.0[${PYTHON_USEDEP}] )
	notebooks? ( dev-python/loompy[${PYTHON_USEDEP}] )
	test? ( >=dev-python/pytest-4.4[${PYTHON_USEDEP}] )
	test? ( dev-python/pytest-runner[${PYTHON_USEDEP}] )
	test? ( >=dev-python/flake8-3.7.7[${PYTHON_USEDEP}] )
	test? ( >=dev-python/coverage-4.5.1[${PYTHON_USEDEP}] )
	test? ( dev-python/codecov[${PYTHON_USEDEP}] )
	test? ( >=dev-python/black-19.3_beta0[${PYTHON_USEDEP}] )
	test? ( >=dev-python/nbconvert-5.4.0[${PYTHON_USEDEP}] )
	test? ( >=dev-python/nbformat-4.4.0[${PYTHON_USEDEP}] )
	test? ( >=dev-python/jupyter-1.0.0[${PYTHON_USEDEP}] )
	test? ( >=dev-python/ipython-7.1.1[${PYTHON_USEDEP}] )"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"

USE Flags

docs
notebooks
test

Dependencies

RDEPEND

>=dev-python/numpy-1.16.2[${PYTHON_USEDEP}]
	dev-python/torch[${PYTHON_USEDEP}]
	>=dev-python/matplotlib-3.1.2[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-0.20.3[${PYTHON_USEDEP}]
	>=dev-python/h5py-2.9.0[${PYTHON_USEDEP}]
	>=dev-python/pandas-0.25[${PYTHON_USEDEP}]
	>=dev-python/tqdm-4.31.1[${PYTHON_USEDEP}]
	>=dev-python/xlrd-1.2.0[${PYTHON_USEDEP}]
	dev-python/hyperopt[${PYTHON_USEDEP}]
	dev-python/anndata[${PYTHON_USEDEP}]
	dev-python/scanpy[${PYTHON_USEDEP}]
	dev-python/scikit-misc[${PYTHON_USEDEP}]
	docs? ( >=dev-python/sphinx-2.0.1[${PYTHON_USEDEP}] )
	docs? ( dev-python/nbsphinx[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx-autodoc-typehints[${PYTHON_USEDEP}] )
	docs? ( >=dev-python/sphinx-rtd-theme-0.3.1[${PYTHON_USEDEP}] )
	docs? ( dev-python/autodocsumm[${PYTHON_USEDEP}] )
	docs? ( dev-python/nbsphinx-link[${PYTHON_USEDEP}] )
	docs? ( dev-python/scanpydoc[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx-automodapi[${PYTHON_USEDEP}] )
	notebooks? ( dev-python/louvain[${PYTHON_USEDEP}] )
	notebooks? ( dev-python/leidenalg[${PYTHON_USEDEP}] )
	notebooks? ( dev-python/python-igraph[${PYTHON_USEDEP}] )
	notebooks? ( >=dev-python/colour-0.1.5[${PYTHON_USEDEP}] )
	notebooks? ( dev-python/umap-learn[${PYTHON_USEDEP}] )
	notebooks? ( >=dev-python/seaborn-0.9.0[${PYTHON_USEDEP}] )
	notebooks? ( dev-python/loompy[${PYTHON_USEDEP}] )
	test? ( >=dev-python/pytest-4.4[${PYTHON_USEDEP}] )
	test? ( dev-python/pytest-runner[${PYTHON_USEDEP}] )
	test? ( >=dev-python/flake8-3.7.7[${PYTHON_USEDEP}] )
	test? ( >=dev-python/coverage-4.5.1[${PYTHON_USEDEP}] )
	test? ( dev-python/codecov[${PYTHON_USEDEP}] )
	test? ( >=dev-python/black-19.3_beta0[${PYTHON_USEDEP}] )
	test? ( >=dev-python/nbconvert-5.4.0[${PYTHON_USEDEP}] )
	test? ( >=dev-python/nbformat-4.4.0[${PYTHON_USEDEP}] )
	test? ( >=dev-python/jupyter-1.0.0[${PYTHON_USEDEP}] )
	test? ( >=dev-python/ipython-7.1.1[${PYTHON_USEDEP}] )

BDEPEND

>=dev-python/numpy-1.16.2[${PYTHON_USEDEP}]
	dev-python/torch[${PYTHON_USEDEP}]
	>=dev-python/matplotlib-3.1.2[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-0.20.3[${PYTHON_USEDEP}]
	>=dev-python/h5py-2.9.0[${PYTHON_USEDEP}]
	>=dev-python/pandas-0.25[${PYTHON_USEDEP}]
	>=dev-python/tqdm-4.31.1[${PYTHON_USEDEP}]
	>=dev-python/xlrd-1.2.0[${PYTHON_USEDEP}]
	dev-python/hyperopt[${PYTHON_USEDEP}]
	dev-python/anndata[${PYTHON_USEDEP}]
	dev-python/scanpy[${PYTHON_USEDEP}]
	dev-python/scikit-misc[${PYTHON_USEDEP}]
	docs? ( >=dev-python/sphinx-2.0.1[${PYTHON_USEDEP}] )
	docs? ( dev-python/nbsphinx[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx-autodoc-typehints[${PYTHON_USEDEP}] )
	docs? ( >=dev-python/sphinx-rtd-theme-0.3.1[${PYTHON_USEDEP}] )
	docs? ( dev-python/autodocsumm[${PYTHON_USEDEP}] )
	docs? ( dev-python/nbsphinx-link[${PYTHON_USEDEP}] )
	docs? ( dev-python/scanpydoc[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx-automodapi[${PYTHON_USEDEP}] )
	notebooks? ( dev-python/louvain[${PYTHON_USEDEP}] )
	notebooks? ( dev-python/leidenalg[${PYTHON_USEDEP}] )
	notebooks? ( dev-python/python-igraph[${PYTHON_USEDEP}] )
	notebooks? ( >=dev-python/colour-0.1.5[${PYTHON_USEDEP}] )
	notebooks? ( dev-python/umap-learn[${PYTHON_USEDEP}] )
	notebooks? ( >=dev-python/seaborn-0.9.0[${PYTHON_USEDEP}] )
	notebooks? ( dev-python/loompy[${PYTHON_USEDEP}] )
	test? ( >=dev-python/pytest-4.4[${PYTHON_USEDEP}] )
	test? ( dev-python/pytest-runner[${PYTHON_USEDEP}] )
	test? ( >=dev-python/flake8-3.7.7[${PYTHON_USEDEP}] )
	test? ( >=dev-python/coverage-4.5.1[${PYTHON_USEDEP}] )
	test? ( dev-python/codecov[${PYTHON_USEDEP}] )
	test? ( >=dev-python/black-19.3_beta0[${PYTHON_USEDEP}] )
	test? ( >=dev-python/nbconvert-5.4.0[${PYTHON_USEDEP}] )
	test? ( >=dev-python/nbformat-4.4.0[${PYTHON_USEDEP}] )
	test? ( >=dev-python/jupyter-1.0.0[${PYTHON_USEDEP}] )
	test? ( >=dev-python/ipython-7.1.1[${PYTHON_USEDEP}] )

Manifest for 0.6.8

Type File Size Source URLs
DIST scvi-0.6.8.tar.gz 26311215 bytes https://files.pythonhosted.org/packages/source/${REALNAME::1}/scvi/scvi-0.6.8.tar.gz