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dev-python/snapatac2 - 2.8.0 (pypi)

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Package Information

Description:
SnapATAC2: Single-cell epigenomics analysis pipeline
Homepage:
https://github.com/
License:
MIT

Ebuild Details

Version EAPI Keywords Slot
2.8.0 8 ~amd64 ~x86 0
View Raw Ebuild 
# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="SnapATAC2: Single-cell epigenomics analysis pipeline"

HOMEPAGE="https://github.com/"
LICENSE="MIT"
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE="recommend test"
DEPENDENCIES="dev-python/anndata[${PYTHON_USEDEP}]
	dev-python/kaleido[${PYTHON_USEDEP}]
	dev-python/multiprocess[${PYTHON_USEDEP}]
	dev-python/MACS3[${PYTHON_USEDEP}]
	dev-python/natsort[${PYTHON_USEDEP}]
	<dev-python/numpy-2.0.0[${PYTHON_USEDEP}]
	<dev-python/pandas-2.1.2[${PYTHON_USEDEP}]
	<dev-python/plotly-6.0.0[${PYTHON_USEDEP}]
	dev-python/polars[${PYTHON_USEDEP}]
	<dev-python/pooch-2.0.0[${PYTHON_USEDEP}]
	dev-python/igraph[${PYTHON_USEDEP}]
	dev-python/pyarrow[${PYTHON_USEDEP}]
	dev-python/pyfaidx[${PYTHON_USEDEP}]
	dev-python/rustworkx[${PYTHON_USEDEP}]
	<dev-python/scipy-2.0.0[${PYTHON_USEDEP}]
	<dev-python/scikit-learn-2.0.0[${PYTHON_USEDEP}]
	>=dev-python/tqdm-4.62[${PYTHON_USEDEP}]
	>=dev-python/typeguard-4.0[${PYTHON_USEDEP}]
	recommend? ( dev-python/scanorama[${PYTHON_USEDEP}] )
	recommend? ( dev-python/harmonypy[${PYTHON_USEDEP}] )
	recommend? ( dev-python/xgboost[${PYTHON_USEDEP}] )
	recommend? ( dev-python/umap-learn[${PYTHON_USEDEP}] )
	recommend? ( dev-python/scanpy[${PYTHON_USEDEP}] )
	recommend? ( dev-python/scvi-tools[${PYTHON_USEDEP}] )
	recommend? ( dev-python/scikit-misc[${PYTHON_USEDEP}] )
	recommend? ( dev-python/magic-impute[${PYTHON_USEDEP}] )
	test? ( dev-python/pytest[${PYTHON_USEDEP}] )
	test? ( ~dev-python/hypothesis-6.72.4[${PYTHON_USEDEP}] )"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"

USE Flags

recommend
test

Dependencies

RDEPEND

dev-python/anndata[${PYTHON_USEDEP}]
	dev-python/kaleido[${PYTHON_USEDEP}]
	dev-python/multiprocess[${PYTHON_USEDEP}]
	dev-python/MACS3[${PYTHON_USEDEP}]
	dev-python/natsort[${PYTHON_USEDEP}]
	<dev-python/numpy-2.0.0[${PYTHON_USEDEP}]
	<dev-python/pandas-2.1.2[${PYTHON_USEDEP}]
	<dev-python/plotly-6.0.0[${PYTHON_USEDEP}]
	dev-python/polars[${PYTHON_USEDEP}]
	<dev-python/pooch-2.0.0[${PYTHON_USEDEP}]
	dev-python/igraph[${PYTHON_USEDEP}]
	dev-python/pyarrow[${PYTHON_USEDEP}]
	dev-python/pyfaidx[${PYTHON_USEDEP}]
	dev-python/rustworkx[${PYTHON_USEDEP}]
	<dev-python/scipy-2.0.0[${PYTHON_USEDEP}]
	<dev-python/scikit-learn-2.0.0[${PYTHON_USEDEP}]
	>=dev-python/tqdm-4.62[${PYTHON_USEDEP}]
	>=dev-python/typeguard-4.0[${PYTHON_USEDEP}]
	recommend? ( dev-python/scanorama[${PYTHON_USEDEP}] )
	recommend? ( dev-python/harmonypy[${PYTHON_USEDEP}] )
	recommend? ( dev-python/xgboost[${PYTHON_USEDEP}] )
	recommend? ( dev-python/umap-learn[${PYTHON_USEDEP}] )
	recommend? ( dev-python/scanpy[${PYTHON_USEDEP}] )
	recommend? ( dev-python/scvi-tools[${PYTHON_USEDEP}] )
	recommend? ( dev-python/scikit-misc[${PYTHON_USEDEP}] )
	recommend? ( dev-python/magic-impute[${PYTHON_USEDEP}] )
	test? ( dev-python/pytest[${PYTHON_USEDEP}] )
	test? ( ~dev-python/hypothesis-6.72.4[${PYTHON_USEDEP}] )

BDEPEND

dev-python/anndata[${PYTHON_USEDEP}]
	dev-python/kaleido[${PYTHON_USEDEP}]
	dev-python/multiprocess[${PYTHON_USEDEP}]
	dev-python/MACS3[${PYTHON_USEDEP}]
	dev-python/natsort[${PYTHON_USEDEP}]
	<dev-python/numpy-2.0.0[${PYTHON_USEDEP}]
	<dev-python/pandas-2.1.2[${PYTHON_USEDEP}]
	<dev-python/plotly-6.0.0[${PYTHON_USEDEP}]
	dev-python/polars[${PYTHON_USEDEP}]
	<dev-python/pooch-2.0.0[${PYTHON_USEDEP}]
	dev-python/igraph[${PYTHON_USEDEP}]
	dev-python/pyarrow[${PYTHON_USEDEP}]
	dev-python/pyfaidx[${PYTHON_USEDEP}]
	dev-python/rustworkx[${PYTHON_USEDEP}]
	<dev-python/scipy-2.0.0[${PYTHON_USEDEP}]
	<dev-python/scikit-learn-2.0.0[${PYTHON_USEDEP}]
	>=dev-python/tqdm-4.62[${PYTHON_USEDEP}]
	>=dev-python/typeguard-4.0[${PYTHON_USEDEP}]
	recommend? ( dev-python/scanorama[${PYTHON_USEDEP}] )
	recommend? ( dev-python/harmonypy[${PYTHON_USEDEP}] )
	recommend? ( dev-python/xgboost[${PYTHON_USEDEP}] )
	recommend? ( dev-python/umap-learn[${PYTHON_USEDEP}] )
	recommend? ( dev-python/scanpy[${PYTHON_USEDEP}] )
	recommend? ( dev-python/scvi-tools[${PYTHON_USEDEP}] )
	recommend? ( dev-python/scikit-misc[${PYTHON_USEDEP}] )
	recommend? ( dev-python/magic-impute[${PYTHON_USEDEP}] )
	test? ( dev-python/pytest[${PYTHON_USEDEP}] )
	test? ( ~dev-python/hypothesis-6.72.4[${PYTHON_USEDEP}] )

Manifest for 2.8.0

Type File Size Source URLs
DIST snapatac2-2.8.0.tar.gz 3940481 bytes https://files.pythonhosted.org/packages/source/${REALNAME::1}/snapatac2/snapatac2-2.8.0.tar.gz