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dev-python/sonicparanoid - 2.0.9 (pypi)

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Package Information

Description:
SonicParanoid: fast, accurate, and comprehensive orthology inference with machine learning and language models
Homepage:
https://gitlab.com/salvo981/sonicparanoid2
License:
GNU GENERAL PUBLIC LICENSE, Version 3.0 GPLv3

Ebuild Details

Version EAPI Keywords Slot
2.0.9 8 ~amd64 ~x86 0
View Raw Ebuild 
# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="SonicParanoid: fast, accurate, and comprehensive orthology inference with machine learning and language models"

HOMEPAGE="https://gitlab.com/salvo981/sonicparanoid2"
LICENSE="GNU GENERAL PUBLIC LICENSE, Version 3.0 GPLv3"
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE=""
DEPENDENCIES="dev-python/biopython[${PYTHON_USEDEP}]
	<dev-python/cython-3.2.0[${PYTHON_USEDEP}]
	>=dev-python/filetype-1.2.0[${PYTHON_USEDEP}]
	dev-python/gensim[${PYTHON_USEDEP}]
	dev-python/gdown[${PYTHON_USEDEP}]
	>=dev-python/mypy-1.17.0[${PYTHON_USEDEP}]
	<dev-python/numpy-2.0[${PYTHON_USEDEP}]
	>=dev-python/pandas-2.3.0[${PYTHON_USEDEP}]
	>=dev-python/pip-25.2[${PYTHON_USEDEP}]
	>=dev-python/psutil-6.0.0[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-1.7.0[${PYTHON_USEDEP}]
	<dev-python/scipy-1.13[${PYTHON_USEDEP}]
	dev-python/smart-open[${PYTHON_USEDEP}]
	>=dev-python/setuptools-80.2.0[${PYTHON_USEDEP}]
	>=dev-python/tqdm-4.66.0[${PYTHON_USEDEP}]
	>=dev-python/wheel-0.44.0[${PYTHON_USEDEP}]"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"

Dependencies

RDEPEND

dev-python/biopython[${PYTHON_USEDEP}]
	<dev-python/cython-3.2.0[${PYTHON_USEDEP}]
	>=dev-python/filetype-1.2.0[${PYTHON_USEDEP}]
	dev-python/gensim[${PYTHON_USEDEP}]
	dev-python/gdown[${PYTHON_USEDEP}]
	>=dev-python/mypy-1.17.0[${PYTHON_USEDEP}]
	<dev-python/numpy-2.0[${PYTHON_USEDEP}]
	>=dev-python/pandas-2.3.0[${PYTHON_USEDEP}]
	>=dev-python/pip-25.2[${PYTHON_USEDEP}]
	>=dev-python/psutil-6.0.0[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-1.7.0[${PYTHON_USEDEP}]
	<dev-python/scipy-1.13[${PYTHON_USEDEP}]
	dev-python/smart-open[${PYTHON_USEDEP}]
	>=dev-python/setuptools-80.2.0[${PYTHON_USEDEP}]
	>=dev-python/tqdm-4.66.0[${PYTHON_USEDEP}]
	>=dev-python/wheel-0.44.0[${PYTHON_USEDEP}]

BDEPEND

dev-python/biopython[${PYTHON_USEDEP}]
	<dev-python/cython-3.2.0[${PYTHON_USEDEP}]
	>=dev-python/filetype-1.2.0[${PYTHON_USEDEP}]
	dev-python/gensim[${PYTHON_USEDEP}]
	dev-python/gdown[${PYTHON_USEDEP}]
	>=dev-python/mypy-1.17.0[${PYTHON_USEDEP}]
	<dev-python/numpy-2.0[${PYTHON_USEDEP}]
	>=dev-python/pandas-2.3.0[${PYTHON_USEDEP}]
	>=dev-python/pip-25.2[${PYTHON_USEDEP}]
	>=dev-python/psutil-6.0.0[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-1.7.0[${PYTHON_USEDEP}]
	<dev-python/scipy-1.13[${PYTHON_USEDEP}]
	dev-python/smart-open[${PYTHON_USEDEP}]
	>=dev-python/setuptools-80.2.0[${PYTHON_USEDEP}]
	>=dev-python/tqdm-4.66.0[${PYTHON_USEDEP}]
	>=dev-python/wheel-0.44.0[${PYTHON_USEDEP}]

Manifest for 2.0.9

Type File Size Source URLs
DIST sonicparanoid-2.0.9.tar.gz 97916746 bytes https://files.pythonhosted.org/packages/source/${REALNAME::1}/sonicparanoid/sonicparanoid-2.0.9.tar.gz