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dev-python/steinbock - 0.16.3 (pypi)

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Package Information

Description:
A toolkit for processing multiplexed tissue images
Homepage:
https://github.com/BodenmillerGroup/steinbock
License:
MIT

Ebuild Details

Version EAPI Keywords Slot
0.16.3 8 ~amd64 ~x86 0
View Raw Ebuild 
# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="A toolkit for processing multiplexed tissue images"

HOMEPAGE="https://github.com/BodenmillerGroup/steinbock"
LICENSE="MIT"
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE="cellpose deepcell imc napari"
DEPENDENCIES="dev-python/anndata[${PYTHON_USEDEP}]
	dev-python/click[${PYTHON_USEDEP}]
	dev-python/click-log[${PYTHON_USEDEP}]
	dev-python/fcswrite[${PYTHON_USEDEP}]
	dev-python/h5py[${PYTHON_USEDEP}]
	dev-python/imageio[${PYTHON_USEDEP}]
	dev-python/networkx[${PYTHON_USEDEP}]
	dev-python/numpy[${PYTHON_USEDEP}]
	dev-python/opencv-python-headless[${PYTHON_USEDEP}]
	dev-python/pandas[${PYTHON_USEDEP}]
	dev-python/scikit-image[${PYTHON_USEDEP}]
	dev-python/scipy[${PYTHON_USEDEP}]
	dev-python/tifffile[${PYTHON_USEDEP}]
	dev-python/xtiff[${PYTHON_USEDEP}]
	cellpose? ( dev-python/cellpose[${PYTHON_USEDEP}] )
	deepcell? ( dev-python/DeepCell[${PYTHON_USEDEP}] )
	deepcell? ( dev-python/pyyaml[${PYTHON_USEDEP}] )
	imc? ( dev-python/readimc[${PYTHON_USEDEP}] )
	napari? ( dev-python/napari[${PYTHON_USEDEP}] )"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"

USE Flags

cellpose
deepcell
imc
napari

Dependencies

RDEPEND

dev-python/anndata[${PYTHON_USEDEP}]
	dev-python/click[${PYTHON_USEDEP}]
	dev-python/click-log[${PYTHON_USEDEP}]
	dev-python/fcswrite[${PYTHON_USEDEP}]
	dev-python/h5py[${PYTHON_USEDEP}]
	dev-python/imageio[${PYTHON_USEDEP}]
	dev-python/networkx[${PYTHON_USEDEP}]
	dev-python/numpy[${PYTHON_USEDEP}]
	dev-python/opencv-python-headless[${PYTHON_USEDEP}]
	dev-python/pandas[${PYTHON_USEDEP}]
	dev-python/scikit-image[${PYTHON_USEDEP}]
	dev-python/scipy[${PYTHON_USEDEP}]
	dev-python/tifffile[${PYTHON_USEDEP}]
	dev-python/xtiff[${PYTHON_USEDEP}]
	cellpose? ( dev-python/cellpose[${PYTHON_USEDEP}] )
	deepcell? ( dev-python/DeepCell[${PYTHON_USEDEP}] )
	deepcell? ( dev-python/pyyaml[${PYTHON_USEDEP}] )
	imc? ( dev-python/readimc[${PYTHON_USEDEP}] )
	napari? ( dev-python/napari[${PYTHON_USEDEP}] )

BDEPEND

dev-python/anndata[${PYTHON_USEDEP}]
	dev-python/click[${PYTHON_USEDEP}]
	dev-python/click-log[${PYTHON_USEDEP}]
	dev-python/fcswrite[${PYTHON_USEDEP}]
	dev-python/h5py[${PYTHON_USEDEP}]
	dev-python/imageio[${PYTHON_USEDEP}]
	dev-python/networkx[${PYTHON_USEDEP}]
	dev-python/numpy[${PYTHON_USEDEP}]
	dev-python/opencv-python-headless[${PYTHON_USEDEP}]
	dev-python/pandas[${PYTHON_USEDEP}]
	dev-python/scikit-image[${PYTHON_USEDEP}]
	dev-python/scipy[${PYTHON_USEDEP}]
	dev-python/tifffile[${PYTHON_USEDEP}]
	dev-python/xtiff[${PYTHON_USEDEP}]
	cellpose? ( dev-python/cellpose[${PYTHON_USEDEP}] )
	deepcell? ( dev-python/DeepCell[${PYTHON_USEDEP}] )
	deepcell? ( dev-python/pyyaml[${PYTHON_USEDEP}] )
	imc? ( dev-python/readimc[${PYTHON_USEDEP}] )
	napari? ( dev-python/napari[${PYTHON_USEDEP}] )

Manifest for 0.16.3

Type File Size Source URLs
DIST steinbock-0.16.3.tar.gz 244951 bytes https://files.pythonhosted.org/packages/source/${REALNAME::1}/steinbock/steinbock-0.16.3.tar.gz