Gentoo Packages

# Copyright 2021-2023 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2

EAPI=8

PYTHON_COMPAT=( python3_{12..13} )
DISTUTILS_USE_PEP517=setuptools
inherit distutils-r1 pypi

DESCRIPTION="Read and represent a wide range of neurophysiology file formats in Python"
HOMEPAGE="https://github.com/NeuralEnsemble/python-neo"

LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64"
IUSE="test"

RDEPEND="
	dev-python/numpy[${PYTHON_USEDEP}]
	dev-python/quantities[${PYTHON_USEDEP}]
"
BDEPEND="
	test? (
		${RDEPEND}
		dev-python/scipy[${PYTHON_USEDEP}]
		dev-python/h5py[${PYTHON_USEDEP}]
		dev-python/matplotlib[${PYTHON_USEDEP}]
		dev-python/pillow[${PYTHON_USEDEP}]
		dev-python/probeinterface[${PYTHON_USEDEP}]
		dev-python/pynwb[${PYTHON_USEDEP}]
		dev-python/tqdm[${PYTHON_USEDEP}]
		dev-vcs/datalad[${PYTHON_USEDEP}]
	)
"
# Testing deps also need:
# igor
# pyedflib https://github.com/holgern/pyedflib
# klusta
# nixio
# sonpy
# ipython

distutils_enable_tests pytest

python_test() {
	# Reported upstream
	# https://github.com/NeuralEnsemble/python-neo/issues/1037
	local EPYTEST_IGNORE=(
		neo/test/iotest/*
		neo/test/rawiotest/*
	)
	# Requires dynamic data download
	local EPYTEST_DESELECT=(
		neo/test/utils/test_datasets.py::TestDownloadDataset::test_download_dataset
	)
	epytest
}