Gentoo Packages

# Copyright 1999-2023 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2

EAPI=8

DISTUTILS_USE_PEP517=hatchling
PYTHON_COMPAT=( python3_{12..13} )
inherit distutils-r1 pypi

DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"

LICENSE="BSD"
SLOT="0"
KEYWORDS="~amd64"
# Segfault error on testing
RESTRICT="test"

RDEPEND="
	>=dev-python/hdmf-3.14.3[${PYTHON_USEDEP}]
	>=sci-libs/hdf5-1.12.2
	dev-python/h5py[${PYTHON_USEDEP}]
	dev-python/numpy[${PYTHON_USEDEP}]
	dev-python/pandas[${PYTHON_USEDEP}]
	dev-python/python-dateutil[${PYTHON_USEDEP}]
	dev-python/requests[${PYTHON_USEDEP}]
	"

EPYTEST_DESELECT=(
	# Reported upsream:
	# https://github.com/NeurodataWithoutBorders/pynwb/issues/1580
	tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached
	tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_bad_ns
	tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_core
	tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension
	tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension_pass_ns
	tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_hdmf_common
	tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_ignore
	tests/validation/test_validate.py::TestValidateCLI::test_validate_file_invalid
	tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_core
	tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_extension
	tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache
	tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache_bad_ns
	# Reported upstream:
	# https://github.com/NeurodataWithoutBorders/pynwb/issues/1800
	tests/unit/test_file.py::TestNoCacheSpec::test_simple
	# Not sandboxed, reported upstream:
	# https://github.com/NeurodataWithoutBorders/pynwb/issues/1800
	tests/read_dandi/test_read_dandi.py::TestReadNWBDandisets::test_read_first_nwb_asset
	tests/unit/test_base.py::TestTimeSeries::test_repr_html
)

distutils_enable_tests pytest