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Install

Install this package:

emerge -a sci-biology/SPAdes

If the package is masked, you can unmask it using the autounmask tool or standard emerge options:

autounmask sci-biology/SPAdes

Or alternatively:

emerge --autounmask-write -a sci-biology/SPAdes

Package Information

Description:

truSPAdes includes support for Illumina TruSeq Synthetic Long Read technology reads. hammer and ionhammer are read error correcting modules for Illumina /IonTorrent reads, resp. dipspades is assembly module for highly polymorphic diploid genomes

Homepage:

https://cab.spbu.ru/software/spades

License:

GPL-2

Versions

Metadata

Description

• truSPAdes includes support for Illumina TruSeq Synthetic Long Read technology reads. hammer and ionhammer are read error correcting modules for Illumina /IonTorrent reads, resp. dipspades is assembly module for highly polymorphic diploid genomes

Maintainers

• Martin Mokrejs (mmokrejs@fold.natur.cuni.cz) - Type: person
• Gentoo Biology Project (sci-biology@gentoo.org) - Type: project

Upstream

• Remote IDs:
  • github: ablab/spades

<pkgmetadata>
	<maintainer type="person">
		<email>mmokrejs@fold.natur.cuni.cz</email>
		<name>Martin Mokrejs</name>
	</maintainer>
	<maintainer type="project">
		<email>sci-biology@gentoo.org</email>
		<name>Gentoo Biology Project</name>
	</maintainer>
	<longdescription>
		truSPAdes includes support for Illumina TruSeq Synthetic Long Read technology reads.
		hammer and ionhammer are read error correcting modules for Illumina /IonTorrent reads, resp.
		dipspades is assembly module for highly polymorphic diploid genomes
	</longdescription>
	<upstream>
		<remote-id type="github">ablab/spades</remote-id>
	</upstream>
</pkgmetadata>

Lint Warnings

• [Error] Missing md5-cache for ebuild SPAdes-3.15.5

Files

• SPAdes-3.15.5-gcc13.patch

Manifest