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# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
DESCRIPTION="Map bisulfite converted sequence reads and cytosine methylation states"
HOMEPAGE="https://www.bioinformatics.babraham.ac.uk/projects/"
SRC_URI="https://github.com/FelixKrueger/Bismark/archive/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="GPL-3+"
SLOT="0"
KEYWORDS="~amd64 ~x86"
DEPEND=""
RDEPEND="sci-biology/bowtie"
S="${WORKDIR}/${P^}"
src_install() {
dobin \
bismark{,2bedGraph,2report,_genome_preparation,_methylation_extractor} \
coverage2cytosine deduplicate_bismark
einstalldocs
dodoc -r Docs
}