sci-biology/cnrun (science)

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Package Information

Description:
CNrun is a neuronal network simulator, with these features: * a conductance- and rate-based Hodgkin-Huxley neurons, a Rall and Alpha-Beta synapses; * a 6-5 Runge-Kutta integration method: slow but precise, adjustable; * Poisson, Van der Pol, Colpitts oscillators and interface for external stimulation sources; * NeuroML network topology import/export; * logging state variables, spikes; * implemented as a Lua module, for scripting model behaviour (e.g., to enable plastic processes regulated by model state); * interaction (topology push/pull, async connections) with other cnrun models running elsewhere on a network, with interactions (planned). Note that there is no `cnrun' executable, which existed in cnrun-1.*. Instead, you write a script for your simulation in Lua, and execute it as detailed in /usr/share/lua-cnrun/examples/example1.lua.
Homepage:
http://johnhommer.com/academic/code/cnrun
License:
GPL-2+

Versions

Version EAPI Keywords Slot
2.1.0-r2 7 ~amd64 ~x86 0

Metadata

Description

Maintainers

Raw Metadata XML
<pkgmetadata>
	<maintainer type="person">
		<email>johnhommer@gmail.com</email>
		<name>Andrei Zavada</name>
	</maintainer>
	<maintainer type="project">
		<email>sci-biology@gentoo.org</email>
		<name>Gentoo Biology Project</name>
	</maintainer>
	<longdescription>
CNrun is a neuronal network simulator, with these features:

* a conductance- and rate-based Hodgkin-Huxley neurons, a Rall and
Alpha-Beta synapses;
* a 6-5 Runge-Kutta integration method: slow but precise, adjustable;
* Poisson, Van der Pol, Colpitts oscillators and interface for
external stimulation sources;
* NeuroML network topology import/export;
* logging state variables, spikes;
* implemented as a Lua module, for scripting model behaviour (e.g.,
to enable plastic processes regulated by model state);
* interaction (topology push/pull, async connections) with other
cnrun models running elsewhere on a network, with interactions
(planned).

Note that there is no `cnrun' executable, which existed in cnrun-1.*.
Instead, you write a script for your simulation in Lua, and execute
it as detailed in /usr/share/lua-cnrun/examples/example1.lua.
</longdescription>
</pkgmetadata>

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Type File Size Versions
Unmatched Entries
Type File Size
DIST cnrun-2.1.0.tar.xz 386076 bytes