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Install this package:

emerge -a sci-biology/cnrun

If the package is masked, you can unmask it using the autounmask tool or standard emerge options:

autounmask sci-biology/cnrun

Or alternatively:

emerge --autounmask-write -a sci-biology/cnrun

Package Information

Description:

CNrun is a neuronal network simulator, with these features: * a conductance- and rate-based Hodgkin-Huxley neurons, a Rall and Alpha-Beta synapses; * a 6-5 Runge-Kutta integration method: slow but precise, adjustable; * Poisson, Van der Pol, Colpitts oscillators and interface for external stimulation sources; * NeuroML network topology import/export; * logging state variables, spikes; * implemented as a Lua module, for scripting model behaviour (e.g., to enable plastic processes regulated by model state); * interaction (topology push/pull, async connections) with other cnrun models running elsewhere on a network, with interactions (planned). Note that there is no `cnrun' executable, which existed in cnrun-1.*. Instead, you write a script for your simulation in Lua, and execute it as detailed in /usr/share/lua-cnrun/examples/example1.lua.

Homepage:

http://johnhommer.com/academic/code/cnrun

License:

GPL-2+

Versions

Metadata

Description

• CNrun is a neuronal network simulator, with these features: * a conductance- and rate-based Hodgkin-Huxley neurons, a Rall and Alpha-Beta synapses; * a 6-5 Runge-Kutta integration method: slow but precise, adjustable; * Poisson, Van der Pol, Colpitts oscillators and interface for external stimulation sources; * NeuroML network topology import/export; * logging state variables, spikes; * implemented as a Lua module, for scripting model behaviour (e.g., to enable plastic processes regulated by model state); * interaction (topology push/pull, async connections) with other cnrun models running elsewhere on a network, with interactions (planned). Note that there is no `cnrun' executable, which existed in cnrun-1.*. Instead, you write a script for your simulation in Lua, and execute it as detailed in /usr/share/lua-cnrun/examples/example1.lua.

Maintainers

• Andrei Zavada (johnhommer@gmail.com) - Type: person
• Gentoo Biology Project (sci-biology@gentoo.org) - Type: project

<pkgmetadata>
	<maintainer type="person">
		<email>johnhommer@gmail.com</email>
		<name>Andrei Zavada</name>
	</maintainer>
	<maintainer type="project">
		<email>sci-biology@gentoo.org</email>
		<name>Gentoo Biology Project</name>
	</maintainer>
	<longdescription>
CNrun is a neuronal network simulator, with these features:

* a conductance- and rate-based Hodgkin-Huxley neurons, a Rall and
Alpha-Beta synapses;
* a 6-5 Runge-Kutta integration method: slow but precise, adjustable;
* Poisson, Van der Pol, Colpitts oscillators and interface for
external stimulation sources;
* NeuroML network topology import/export;
* logging state variables, spikes;
* implemented as a Lua module, for scripting model behaviour (e.g.,
to enable plastic processes regulated by model state);
* interaction (topology push/pull, async connections) with other
cnrun models running elsewhere on a network, with interactions
(planned).

Note that there is no `cnrun' executable, which existed in cnrun-1.*.
Instead, you write a script for your simulation in Lua, and execute
it as detailed in /usr/share/lua-cnrun/examples/example1.lua.
</longdescription>
</pkgmetadata>

Lint Warnings

• [Error] Missing md5-cache for ebuild cnrun-2.1.0-r2

Manifest