View Raw Ebuild
# Copyright 1999-2023 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
DESCRIPTION="Distance-based probabilistic multiple sequence alignment algo for DNA/RNA/prot"
HOMEPAGE="https://fsa.sourceforge.net"
SRC_URI="https://downloads.sourceforge.net/project/fsa/${P}.tar.gz"
LICENSE="GPL-3+"
SLOT="0"
KEYWORDS="~amd64"
DEPEND="dev-java/java-config"
RDEPEND="${DEPEND}"
# needs java for fsa-1.15.9/display/ processing:
# jar cmf mad/manifest.mf mad.jar \
# -C . mad \
# -C . JMF-2.1.1e/lib/jmf.jar \
# -C . jai-1_1_3/lib/jai_core.jar \
# -C . jai-1_1_3/lib/jai_codec.jar
# * Home for VM '' does not exist:
# * Invalid System VM:
src_install(){
default
# avoid file collision with sci-biology/ESTate-0.5
mv "${D}"/"${EPREFIX}"/usr/bin/translate "${D}"/"${EPREFIX}"/usr/bin/fsa_translate || die
}
pkg_postinst(){
einfo "Optionally you may want to install sci-biology/mummer and"
einfo "sci-biology/exonerate"
}