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Package Information

Description:

Metagenome assembler using succinct de Bruijn graph approach with CUDA

Homepage:

https://github.com/voutcn/megahit http://bioinformatics.oxfordjournals.org/content/31/10/1674.abstract

License:

GPL-3

Versions

Metadata

Maintainers

• Martin Mokrejs (mmokrejs@fold.natur.cuni.cz) - Type: person
• Gentoo Biology Project (sci-biology@gentoo.org) - Type: project

Upstream

• Remote IDs:
  • github: voutcn/megahit

<pkgmetadata>
	<maintainer type="person">
		<email>mmokrejs@fold.natur.cuni.cz</email>
		<name>Martin Mokrejs</name>
	</maintainer>
	<maintainer type="project">
		<email>sci-biology@gentoo.org</email>
		<name>Gentoo Biology Project</name>
	</maintainer>
	<use>
		<flag name="cuda">Enable NVIDIA GTX680 (4G memory) and Tesla K40c (12G memory) with CUDA 5.5, 6.0 and 6.5</flag>
	</use>
	<upstream>
		<remote-id type="github">voutcn/megahit</remote-id>
	</upstream>
</pkgmetadata>

Lint Warnings

• [Warning] Ebuild 1.2.9 uses IUSE flag 'openmp' which is not documented in metadata.xml. Add the flag to metadata.xml <use> section.
• [Warning] Missing md5-cache for version 1.2.9. Run 'ebuild <ebuild_file> manifest' or 'egencache' to generate it.

USE Flags

Manifest