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Install

Install this package:

emerge -a sci-biology/megahit

If the package is masked, you can unmask it using the autounmask tool or standard emerge options:

autounmask sci-biology/megahit

Or alternatively:

emerge --autounmask-write -a sci-biology/megahit

Package Information

Description:

Metagenome assembler using succinct de Bruijn graph approach with CUDA

Homepage:

https://github.com/voutcn/megahit http://bioinformatics.oxfordjournals.org/content/31/10/1674.abstract

License:

GPL-3

Versions

Metadata

Maintainers

• Martin Mokrejs (mmokrejs@fold.natur.cuni.cz) - Type: person
• Gentoo Biology Project (sci-biology@gentoo.org) - Type: project

Upstream

• Remote IDs:
  • github: voutcn/megahit

<pkgmetadata>
	<maintainer type="person">
		<email>mmokrejs@fold.natur.cuni.cz</email>
		<name>Martin Mokrejs</name>
	</maintainer>
	<maintainer type="project">
		<email>sci-biology@gentoo.org</email>
		<name>Gentoo Biology Project</name>
	</maintainer>
	<use>
		<flag name="cuda">Enable NVIDIA GTX680 (4G memory) and Tesla K40c (12G memory) with CUDA 5.5, 6.0 and 6.5</flag>
	</use>
	<upstream>
		<remote-id type="github">voutcn/megahit</remote-id>
	</upstream>
</pkgmetadata>

Lint Warnings

• [Warning] USE flag 'openmp' in ebuild 1.2.9 is not documented in metadata.xml
• [Error] Missing md5-cache for ebuild megahit-1.2.9

USE Flags

Manage flags for this package: euse -i <flag> -p sci-biology/megahit | euse -E <flag> -p sci-biology/megahit | euse -D <flag> -p sci-biology/megahit

Manifest