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Description:

MMseqs2 (Many-against-Many sequence searching) is a software suite toi search and cluster huge protein and nucleotide sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++. The software is designed to run on multiple cores and servers and exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it achieves almost the same sensitivity. It can perform profile searches with the same sensitivity as PSI-BLAST at over 400 times its speed.

Homepage:

https://github.com/soedinglab/MMseqs2

License:

GPL-3

Versions

Metadata

Description

• MMseqs2 (Many-against-Many sequence searching) is a software suite toi search and cluster huge protein and nucleotide sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++. The software is designed to run on multiple cores and servers and exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it achieves almost the same sensitivity. It can perform profile searches with the same sensitivity as PSI-BLAST at over 400 times its speed.

Maintainers

• Joel Berendzen (joel@generisbio.com) - Type: person

Upstream

• Remote IDs:
  • github: soedinglab/mmseqs2

<pkgmetadata>
	<maintainer type="person">
		<email>joel@generisbio.com</email>
		<name>Joel Berendzen</name>
	</maintainer>
	<longdescription>
        MMseqs2 (Many-against-Many sequence searching) is a software suite toi
        search and cluster huge protein and nucleotide sequence sets.
        MMseqs2 is open source GPL-licensed software implemented in C++.
        The software is designed to run on multiple cores and servers
        and exhibits very good scalability. MMseqs2 can run 10000 times
        faster than BLAST. At 100 times its speed it achieves almost the
        same sensitivity. It can perform profile searches with the same
        sensitivity as PSI-BLAST at over 400 times its speed.
    </longdescription>
	<upstream>
		<doc>https://github.com/soedinglab/mmseqs2/wiki</doc>
		<remote-id type="github">soedinglab/mmseqs2</remote-id>
	</upstream>
</pkgmetadata>

Lint Warnings

• [Warning] Ebuild 13.0-r1 uses IUSE flag 'cpu_flags_x86_sse4_1' which is not documented in metadata.xml. Add the flag to metadata.xml <use> section.
• [Warning] Ebuild 13.0-r1 uses IUSE flag 'cpu_flags_x86_sse2' which is not documented in metadata.xml. Add the flag to metadata.xml <use> section.
• [Warning] Ebuild 13.0-r1 uses IUSE flag 'cpu_flags_x86_avx2' which is not documented in metadata.xml. Add the flag to metadata.xml <use> section.
• [Warning] Missing md5-cache for version 13.0-r1. Run 'ebuild <ebuild_file> manifest' or 'egencache' to generate it.

USE Flags

Files

• mmseqs2-13.0-properly-handle-cpuflags.patch

Manifest