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# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
DESCRIPTION="Stringent short-read aligner supporting filters and various output formats"
HOMEPAGE="https://github.com/magnusmanske/snpomatic"
if [ "$PV" == "9999" ]; then
inherit git-r3
EGIT_REPO_URI="https://github.com/magnusmanske/snpomatic.git"
else
SRC_URI="https://github.com/magnusmanske/snpomatic/archive/v${PV}.tar.gz -> ${P}.tar.gz"
KEYWORDS="~amd64"
fi
LICENSE="GPL-3"
SLOT="0"
DEPEND=""
RDEPEND="${DEPEND}"
src_prepare(){
default
sed -e 's/^CXX=/#CXX=/;s/^CXXFLAGS=/#CXXFLAGS=/' -i Makefile || die
}
src_install(){
dobin findknownsnps
dodoc doc/Manual.doc
}