aocl-libm
- Ebuilds: 1, Testing: 3.1.0 Description:
AMD LibM is a software library containing a collection of basic math
functions optimized for x86-64 processor based machines. It provides
many routines from the list of standard C99 math functions.
Homepage:https://developer.amd.com/amd-aocl/amd-math-library-libm/ License: AMD
arrayfire
- Ebuilds: 1, Testing: 3.8.0 Description:
ArrayFire is a high performance software library for parallel
computing with an easy-to-use API. Its array based function set
makes parallel programming simple. ArrayFire's multiple backends
(CUDA, OpenCL and native CPU) make it platform independent and
highly portable.
Homepage:https://arrayfire.com/ License: BSD nonfree? ( OpenSIFT )
asl
- Ebuilds: 2, Testing: 0.1.7 Description:
Advanced Simulation Library (ASL) is a free and open source hardware
accelerated multiphysics simulation platform (and an extensible general
purpose tool for solving Partial Differential Equations). Its
computational engine is written in OpenCL and utilizes matrix-free
solution techniques which enable extraordinarily high performance,
memory efficiency and deployability on a variety of massively parallel
architectures, ranging from inexpensive FPGAs, DSPs and GPUs up to
heterogeneous clusters and supercomputers. The engine is hidden entirely
behind simple C++ classes, so that no OpenCL knowledge is required from
application programmers. Mesh-free, immersed boundary approach allows to
move from CAD directly to simulation drastically reducing pre-processing
efforts and amount of potential errors. ASL can be used to model various
coupled physical and chemical phenomena and employed in a multitude of
fields: computational fluid dynamics, virtual sensing, industrial
process data validation and reconciliation, image-guided surgery,
computer-aided engineering, design space exploration, crystallography,
etc.
Homepage:http://asl.org.il/ License: AGPL-3
bids-validator
- Ebuilds: 1, Testing: 1.4.4-r1 Description:
A limited library of helper functions written in Python, the main
function of which is to determine whether a file path is compliant
with the BIDS specification.
Homepage:https://github.com/bids-standard/bids-validator License: MIT
clfft
- Ebuilds: 2, Testing: 2.12.2-r1 Description:
clFFT is a software library containing FFT functions written in
OpenCL. In addition to GPU devices, the libraries also support
running on CPU devices to facilitate debugging and multicore
programming.
clFFT is part of the clMath sofware library, which is the
successor of APPML.
Homepage:https://github.com/clMathLibraries/clFFT License: Apache-2.0
cuba
- Ebuilds: 1, Testing: 4.2.2 Description:
The Cuba library offers a choice of four independent routines for multidimensional numerical integration: Vegas, Suave, Divonne, and Cuhre.
Homepage:http://www.feynarts.de/cuba License: LGPL-3
fdlibm
- Ebuilds: 1, Testing: 5.3.1 Description:
FDLIBM (Freely Distributable LIBM) is a C math library
for machines that support IEEE 754 floating-point arithmetic.
In this release, only double precision is supported.
Homepage:https://www.netlib.org/fdlibm License: freedist
gvar
- Ebuilds: 1, Testing: 13.0.2 Description:
This package facilitates the creation and manipulation of arbitrarily complicated (correlated) multi-dimensional Gaussian random variables. The random variables are represented by a new data type (gvar.GVar) that can be used in arithmetic expressions and pure Python functions. Such expressions/functions create new Gaussian random variables while automatically tracking statistical correlations between the new and old variables. This data type is useful for simple error propagation, but also is heavily used by the Bayesian least-squares fitting module lsqfit.py to define priors and specify fit results, while accounting for correlations between all variables.
Homepage:https://github.com/gplepage/gvar License: GPL-3
iRODS
- Ebuilds: 1
Description: Integrated Rule Oriented Data System, a data management software
Homepage:https://irods.org License: BSD
itk
- Ebuilds: 2, Testing: 5.3.0-r1 Description:
Insight Segmentation and Registration Toolkit (ITK) is a library
that provides developers with an extensive suite of tools for image
analysis.
Homepage:https://itk.org License: Apache-2.0
labbookdb
- Ebuilds: 1, Testing: 0.1-r1 Description:
LabbookDB is a relational database application framework for life sciences,
providing an extendable schema and functions to conveniently add and
retrieve information, and generate summaries.
Homepage:https://github.com/TheChymera/LabbookDB License: GPL-3
libmatheval
- Ebuilds: 2, Testing: 1.1.11-r1 Description:
GNU libmatheval is a library (callable from C and Fortran) to parse
and evaluate symbolic expressions input as text. It supports
expressions in any number of variables of arbitrary names, decimal
and symbolic constants, basic unary and binary operators, and
elementary mathematical functions. In addition to parsing and
evaluation, libmatheval can also compute symbolic derivatives and
output expressions to strings.
Homepage:https://www.gnu.org/software/libmatheval/ License: GPL-3+
libmaus2
- Ebuilds: 2, Testing: 2.0.689 Description:
libmaus is a collection of data structures and algorithms. It contains
I/O classes (single byte and UTF-8)
bitio classes (input, output and various forms of bit level manipulation)
text indexing classes (suffix and LCP array, fulltext and minute (FM), ...)
BAM sequence alignment files input/output (simple and collating)
and many lower level support classes.
Homepage:https://github.com/gt1/libmaus License: BSD-2 GPL-2 GPL-3 MIT ZLIB
lwpr
- Ebuilds: 1, Testing: 1.2.5 Description:
Locally Weighted Projection Regression (LWPR) is a recent algorithm
that achieves nonlinear function approximation in high dimensional spaces
with redundant and irrelevant input dimensions. At its core, it uses
locally linear models, spanned by a small number of univariate
regressions in selected directions in input space. A locally
weighted variant of Partial Least Squares (PLS) is employed for
doing the dimensionality reduction.
Homepage:https://web.inf.ed.ac.uk/slmc License: LGPL-2.1
nexus
- Ebuilds: 1, Testing: 4.4.3_p20200126-r1 Description:
Libraries and tools for the NeXus data format, developed
collaboratively by scientists from major scientific facilities to facilitate
analysis and visualisation of neutron, x-ray and muon data.
NeXus is based on HDF5.
Homepage:http://nexusformat.org/ License: LGPL-2.1
nibabel
- Ebuilds: 1, Testing: 5.1.0 Description:
The package provides read and write access to some common medical and
neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI,
NIfTI1, MINC, MGH and ECAT as well as PAR/REC. It can read and write Freesurfer
geometry, and read Freesurfer morphometry and annotation files. There is some
very limited support for DICOM. NiBabel is the successor of PyNIfTI.
Homepage:https://nipy.org/nibabel/ License: MIT
nipype
- Ebuilds: 1, Testing: 1.10.0 Description:
Nipype, an open-source, community-developed initiative under the
umbrella of NiPy, is a Python project that provides a uniform interface
to existing neuroimaging software and facilitates interaction between
these packages within a single workflow. Nipype provides an environment
that encourages interactive exploration of algorithms from different
packages (e.g., SPM, FSL, FreeSurfer, Camino, MRtrix, MNE, AFNI, Slicer),
eases the design of workflows within and between packages, and reduces
the learning curve necessary to use different packages. Nipype is
creating a collaborative platform for neuroimaging software development
in a high-level language and addressing limitations of existing pipeline systems.
Homepage:https://nipype.readthedocs.io/ License: BSD
optpp
- Ebuilds: 1, Testing: 2.4 Description:
OPT++ is a library of nonlinear optimization algorithms written in
C++. The motivation for this package is to build an environment for
the rapid prototyping and development of new optimization
algorithms. In particular, the focus is on robust and efficient
algorithms for problems in which the function and constraint
evaluations require the execution of an expensive computer
simulation. Currently, OPT++ includes the classic Newton methods, a
nonlinear interior-point method, parallel direct search, generating
set search, a trust region - parallel direct search hybrid, and a
wrapper to NPSOL. Between these methods, a wide range of problems
can be solved, e.g. with or without constraints, with or without
analytic gradients, simulation based, etc.
Homepage:https://software.sandia.gov/opt++/ License: LGPL-2
pg2plplot
- Ebuilds: 1, Testing: 5.13.1 Description:
PG2PLplot is code intended to help the transition from Fortran code
linked against PGPlot to linking it against PLplot.
Homepage:http://pg2plplot.sourceforge.net License: GPL-3
pybids
- Ebuilds: 1, Testing: 0.12.4-r1 Description:
PyBIDS is a Python library to centralize interactions with datasets
conforming BIDS (Brain Imaging Data Structure) format. For more
information about BIDS visit http://bids.neuroimaging.io.
Homepage:https://github.com/INCF/pybids License: MIT
rdkit
- Ebuilds: 1, Testing: 2024.09.2 Description: Cheminformatics and machine-learning software written in C++ and Python
Homepage:https://www.rdkit.org/ License: BSD
spyking-circus
- Ebuilds: 1, Testing: 1.1.0-r1 Description:
SpyKING CIRCUS is a Python code to allow fast spike sorting on multi
channel recordings. A publication on the algorithm can be found at
https://elifesciences.org/articles/34518 . The software has been tested
on datasets coming from in vitro retina with 252 electrodes MEA, from in
vivo hippocampus with tetrodes, and in vivo and in vitro cortex data.
Homepage:https://github.com/spyking-circus/spyking-circus/ License: CeCILL-2
starparse
- Ebuilds: 1, Testing: 0.9-r1 Description: Library for parsing NMR star files (peak-list format) and CIF files
Homepage:http://burrow-owl.sourceforge.net/ License: GPL-2
torchaudio
- Ebuilds: 1, Testing: 2.4.1 Description: Data manipulation and transformation for audio signal processing
Homepage:https://github.com/pytorch/audio License: BSD
vegas
- Ebuilds: 1, Testing: 6.0.1 Description:
The vegas package is for evaluating multidimensional integrals using an improved version of the adaptive Monte Carlo vegas algorithm (G. P. Lepage, J. Comput. Phys. 27(1978) 192).
Homepage:https://github.com/gplepage/vegas License: GPL-3
vxl
- Ebuilds: 1, Testing: 2.0.2 Description:
VXL (the Vision-something-Libraries) is a collection of C++ libraries designed
for computer vision research and implementation. It was created from TargetJr
and the IUE with the aim of making a light, fast and consistent system. VXL is
written in ANSI/ISO C++ and is designed to be portable over many platforms.
Homepage:https://vxl.github.io/ License: BSD
wannier90
- Ebuilds: 1, Testing: 3.1.0 Description:
Wannier90 is an electronic-structure software computing maximally-localized Wannier functions (MLWF).
It works on top of other electronic-structure software, such as Abinit, FLEUR, and PwSCF.
The project and associated repository on Launchpad only deal with patches over the official release,
as well as its packaging into the Debian and Ubuntu distributions.
Homepage:http://www.wannier.org/ License: GPL-2
zarja
- Ebuilds: 1, Testing: 2.2.0 Description:
Zarja is open-source library that allows to make multi-agent
simulations on graphs. Its functionality was proved in Classical or
Quantum mechanical models.
Homepage:https://sourceforge.net/projects/zarja/ License: GPL-2